Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1050 98.7 9e-16 seq93 98.7 9e-16 seq1023 96.9 3e-15 >seq1050 Length=18215 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 5219 ACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 5160 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| || ||||| || || || || ||||| Sbjct 5159 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCC 5100 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||| || || |||| | || | | || | ||||||||| |||| Sbjct 5099 CTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATCGAGTCCGACGGCTCCACGTCGAG 5040 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || || ||||| || || | |||||||||||| Sbjct 5039 CGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCAT 4998 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 5447 ACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 5388 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| || ||||| || || || || ||||| Sbjct 5387 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCC 5328 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||| || || |||| | || | | || | ||||||||| |||| Sbjct 5327 CTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAG 5268 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | || || || ||||| || || | ||| ||||||||| Sbjct 5267 CGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 5225 >seq93 Length=57835 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/199 (71%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||||||| || || || || ||||| || || | Sbjct 54825 GACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCG 54766 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || ||||| || || || || ||||| || | Sbjct 54765 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACG 54706 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| |||| ||| | ||| || || ||||| || || Sbjct 54705 TTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTC 54646 Query 132110 ATGAAAATCTGCATGACTT 132128 | ||| |||||||| |||| Sbjct 54645 ACGAAGATCTGCAT-ACTT 54628 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||||| |||| || | | ||||| || ||||||||||||||||||| || Sbjct 55537 ACGAAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGT 55478 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || || | |||| |||||||| || || || || ||||| Sbjct 55477 GCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 55418 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||| || || ||||| || | | || | | || | ||||||||| || | Sbjct 55417 CTCTTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 55358 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | ||| || || ||||| || || | || ||||||||| Sbjct 55357 CGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 55315 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||||||| || || || || ||||| || || | Sbjct 55053 GACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCG 54994 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || ||||| ||||| || || ||||| || | Sbjct 54993 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCTTTGTCCTGGATCTTTTGCTTGACG 54934 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || || ||||| || || Sbjct 54933 TTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTC 54874 Query 132110 ATGAAAATCTGCATG 132124 | || ||||||||| Sbjct 54873 ACAAAGATCTGCATG 54859 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||||||| || || || || ||||| || || | Sbjct 55281 GACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCG 55222 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || ||||| ||||| || || ||||| || | Sbjct 55221 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCTTTGTCCTGGATCTTTTGCTTGACG 55162 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || || ||||| || || Sbjct 55161 TTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTC 55102 Query 132110 ATGAAAATCTGCATG 132124 | || ||||||||| Sbjct 55101 ACAAAGATCTGCATG 55087 >seq1023 Length=18726 Score = 96.9 bits (106), Expect = 3e-15 Identities = 404/626 (65%), Gaps = 15/626 (2%) Strand=Plus/Plus Query 147792 CATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCG--CGCTTTGCAATCCTCG 147849 ||| |||||||| |||||||| || ||||| | || ||||| ||| ||||| |||| Sbjct 3407 CATGAACAGATCAGGCACCCAAAGGGCGTAGAACAGGTCGCGAGCGCGGTGCAA--CTCG 3464 Query 147850 GCGCCCATGTTGCGTTTCAAATT--AAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAA 147907 ||| ||| | | | | ||| || | | | | || |||||||| || || | Sbjct 3465 TTGCCGTGGTT-CTTACGGAGGTCCAAGAACTCGA-ACACATCTGCGTGCCAAGGCTCCA 3522 Query 147908 TGTAGACGGCCAGCGCACCTTTACGCTT---TCCGCCCTGGTCGACATGGCGCACCATGT 147964 |||| ||| | | || |||||||| |||||||||||| || | ||| | ||| Sbjct 3523 AATAGATGGCGAAGGAGCCCTTACGCTTGCCTCCGCCCTGGTCCACGTACCGCGCGGTGT 3582 Query 147965 TGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCT 148024 ||||||||| |||| |||||| | ||| | | | |||||| ||| ||| | Sbjct 3583 CGTTAAACACCCGCAGCATGGGGATGATGCCATTGGACGAGCCGTTCGTGCCTCGGATGT 3642 Query 148025 TGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATA 148084 |||| | |||||| | | ||||| | | |||||| || ||| | | || || | Sbjct 3643 AGCTGTTGGTGGCTCGGATGTTGTGCATACTGATGCCAATACCTCCGGCCCATTTAGAGA 3702 Query 148085 TGGCAGCGCA-ATCGC-CCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCC 148142 | ||| ||| || || || || ||| ||||| || || ||||| || | | | Sbjct 3703 T-ACAG-GCACATTGCTTTAACGTGTCGTAAATGCCTTCAATTGAGTCGTCTTGCATGGC 3760 Query 148143 AAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACT 148202 | | || || || ||| ||| || | |||| || || ||||| || || | Sbjct 3761 CAATAGGAAGCAAGACGACAGTTGTGGGCGCGGCGTGCCGGCGTTAAAAAGTGTCGGGGT 3820 Query 148203 CGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTC 148262 || ||||| || || |||| ||| | |||||||| | ||| | | |||| Sbjct 3821 GGCATGCGTGAAAAACATTTGCGACATGAGCTCGTACGTCTCCAGGGCGGCCGCAATGTT 3880 Query 148263 GTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTG 148322 | ||| ||||| || || |||||||| | ||| ||||| || || || | |||| Sbjct 3881 GCTCTTGTGGATGCCAAGTGCCACGCGCATAATCATTTGCTGCGGACGCTCCACCACTTT 3940 Query 148323 ATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATC 148382 ||| | || || || || ||||| ||||| | |||||||| | |||||| Sbjct 3941 GCCGTTTACGCGGAAGAGGTACCCGCGCTCGAGAGTTTTAAACCCAAAGTAGTCGTAATC 4000 Query 148383 AAAATCTAGCTCGTAAGCGATGGCCG 148408 ||| || | |||| |||||||| Sbjct 4001 AAAGTCCCGGTCGTGGATGATGGCCG 4026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476554995624240