Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_025963.1 Length=139981 Score E Sequences producing significant alignments: (Bits) Value seq671 105 6e-18 >seq671 Length=24399 Score = 105 bits (116), Expect = 6e-18 Identities = 133/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 5340 CTCGCAGATGAGCTGCGCCACGCGGTCGCCTCGCCGCACCACGAAGGTCTCTTGGCCGAA 5399 |||| ||||||||||||||||||||| || ||| || |||| ||| ||||| Sbjct 16859 CTCGAGGATGAGCTGCGCCACGCGGTCTCCGCGCTTGACGGGGAAGTCCTC--GGCCGCG 16802 Query 5400 --GTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAGTCCGGGTCCACGACGCCCGCTCCC 5457 |||||| || | ||| |||| ||| || ||| |||| | ||| | ||||| || ||| Sbjct 16801 TGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACGCCGGCGCCC 16742 Query 5458 ACATCCACGAAGTTGTTTACCGCGAGACCGGACCTCGGCGCCACGCGACCGTAGCAGCCG 5517 || | ||| | || | |||||| ||||| | |||||||||||| ||||||||||| Sbjct 16741 GTGTCGATGAACTGCTTGAGCGCGAGTCCGGAGCGCGGCGCCACGCGCGCGTAGCAGCCG 16682 Query 5518 T 5518 | Sbjct 16681 T 16681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447758391864240