Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14]
9,434 sequences; 74,863,594 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq7744 105 8e-18
seq58 98.7 1e-15
seq584 96.9 4e-15
seq807 87.8 2e-12
>seq7744
Length=2697
Score = 105 bits (116), Expect = 8e-18
Identities = 194/282 (69%), Gaps = 2/282 (1%)
Strand=Plus/Minus
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
|| || ||| ||| | ||||| || ||| || || || || ||||||| || ||
Sbjct 1845 GCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCA 1786
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778
|||||||| || |||||||| | ||| | || | |||||| || || |||||||||||
Sbjct 1785 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATG 1726
Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT-TTGCATCAAA 122837
||||||||| || ||||| | || || || | | | || ||| ||| | || |
Sbjct 1725 CCCTCCACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACTCGCGGGTCGCA 1667
Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897
||| || | ||||| | ||| ||||||| | ||| || | || | |||||| |
Sbjct 1666 CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAG 1607
Query 122898 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 122939
| || | ||| || | | ||||||| ||||| |||||||
Sbjct 1606 CAGGTGGTCCTTCTCCGTTGCATCCTTGATGTACGTGTCAAT 1565
>seq58
Length=62634
Score = 98.7 bits (108), Expect = 1e-15
Identities = 241/359 (67%), Gaps = 10/359 (3%)
Strand=Plus/Plus
Query 181624 AACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAA 181683
||||||| |||||||| ||| | || || || || |||||||| | | | || || ||
Sbjct 52088 AACCCGTTCCGATACCGTCGCTGCCGTTGACAAGTACCATTGGGATAATCGGGATATACC 52147
Query 181684 AGTCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743
| || || ||||| || | || || ||||||||||| | ||| | | || |||
Sbjct 52148 ATTCCGGCTCAATTGATTGACCGTCTTCGTCCAAGTATTCGAGCACATCATTGTCAAGAG 52207
Query 181744 GATCAAAGATCTTGCGAGCCTCCTTGGT--AAGTTTTGTGAAGATATACCTCGTTTGAGA 181801
||||| ||||| ||||| ||| | ||| || ||||| ||||| | | |
Sbjct 52208 GATCATAGATCCGGCGAG-TGAGTTGTTCCAAG-TTCGTGAAAATATAACGAGCGCTGGC 52265
Query 181802 AGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAAT 181861
|| || || || ||||| | ||||||||| || ||||| |||| || |||| ||
Sbjct 52266 TGCATCCTTGCCGCCCATCAAACGCGTACCGAACTGACCGATTGGCGACAGGAGGTGGAT 52325
Query 181862 GTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCC-GCAAGGGACACT- 181919
|||||| || | |||| | |||| || ||||| || |||| || ||
Sbjct 52326 GTTGTTGCTTCCGACAAAGTCCTGAGCCATGTTGACGATACAGCCCTGCAA---ACTCTG 52382
Query 181920 -TCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCA 181977
|| ||||| ||||| || || | || | ||||| | ||||| |||||||||||||
Sbjct 52383 CTCGCCGTGATGGTACGCGGAGTGCTCTGACACATAACCAGCCAATTGTGCCACCTTCA 52441
>seq584
Length=26749
Score = 96.9 bits (106), Expect = 4e-15
Identities = 192/282 (68%), Gaps = 2/282 (1%)
Strand=Plus/Plus
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
|| || ||| ||| | ||||| || ||| || || || || ||||||| || ||
Sbjct 11288 GCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCA 11347
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778
|||||||| || |||||||| | ||| | || | |||||| || || |||||||||||
Sbjct 11348 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATG 11407
Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT-TTGCATCAAA 122837
|||||||| || ||||| | | ||| || | | | || ||| ||| | || |
Sbjct 11408 CCCTCCACGGTTGCGAACGCCAGCACGCGCTCCGGGTACGA-CGACACTCGCGGGTCGCA 11466
Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897
||| || | ||||| | ||| ||||||| | ||| || | || | |||||| |
Sbjct 11467 CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGAATCGTATCGATGGCACGCAG 11526
Query 122898 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 122939
| || | ||| || | ||||||| ||||| |||||||
Sbjct 11527 CAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAAT 11568
>seq807
Length=21995
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341
|||||||| ||||| |||| | |||| ||||||||||||||| | | || ||||||||||
Sbjct 1102 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 1043
Query 145342 CAGGTAGGAGCTT 145354
| |||||||||||
Sbjct 1042 CCGGTAGGAGCTT 1030
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627957939326400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |