Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq7744 105 8e-18 seq58 98.7 1e-15 seq584 96.9 4e-15 seq807 87.8 2e-12 >seq7744 Length=2697 Score = 105 bits (116), Expect = 8e-18 Identities = 194/282 (69%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 || || ||| ||| | ||||| || ||| || || || || ||||||| || || Sbjct 1845 GCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCA 1786 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 |||||||| || |||||||| | ||| | || | |||||| || || ||||||||||| Sbjct 1785 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATG 1726 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT-TTGCATCAAA 122837 ||||||||| || ||||| | || || || | | | || ||| ||| | || | Sbjct 1725 CCCTCCACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACTCGCGGGTCGCA 1667 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 ||| || | ||||| | ||| ||||||| | ||| || | || | |||||| | Sbjct 1666 CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAG 1607 Query 122898 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 122939 | || | ||| || | | ||||||| ||||| ||||||| Sbjct 1606 CAGGTGGTCCTTCTCCGTTGCATCCTTGATGTACGTGTCAAT 1565 >seq58 Length=62634 Score = 98.7 bits (108), Expect = 1e-15 Identities = 241/359 (67%), Gaps = 10/359 (3%) Strand=Plus/Plus Query 181624 AACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAA 181683 ||||||| |||||||| ||| | || || || || |||||||| | | | || || || Sbjct 52088 AACCCGTTCCGATACCGTCGCTGCCGTTGACAAGTACCATTGGGATAATCGGGATATACC 52147 Query 181684 AGTCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743 | || || ||||| || | || || ||||||||||| | ||| | | || ||| Sbjct 52148 ATTCCGGCTCAATTGATTGACCGTCTTCGTCCAAGTATTCGAGCACATCATTGTCAAGAG 52207 Query 181744 GATCAAAGATCTTGCGAGCCTCCTTGGT--AAGTTTTGTGAAGATATACCTCGTTTGAGA 181801 ||||| ||||| ||||| ||| | ||| || ||||| ||||| | | | Sbjct 52208 GATCATAGATCCGGCGAG-TGAGTTGTTCCAAG-TTCGTGAAAATATAACGAGCGCTGGC 52265 Query 181802 AGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAAT 181861 || || || || ||||| | ||||||||| || ||||| |||| || |||| || Sbjct 52266 TGCATCCTTGCCGCCCATCAAACGCGTACCGAACTGACCGATTGGCGACAGGAGGTGGAT 52325 Query 181862 GTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCC-GCAAGGGACACT- 181919 |||||| || | |||| | |||| || ||||| || |||| || || Sbjct 52326 GTTGTTGCTTCCGACAAAGTCCTGAGCCATGTTGACGATACAGCCCTGCAA---ACTCTG 52382 Query 181920 -TCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCA 181977 || ||||| ||||| || || | || | ||||| | ||||| ||||||||||||| Sbjct 52383 CTCGCCGTGATGGTACGCGGAGTGCTCTGACACATAACCAGCCAATTGTGCCACCTTCA 52441 >seq584 Length=26749 Score = 96.9 bits (106), Expect = 4e-15 Identities = 192/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 || || ||| ||| | ||||| || ||| || || || || ||||||| || || Sbjct 11288 GCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCA 11347 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 |||||||| || |||||||| | ||| | || | |||||| || || ||||||||||| Sbjct 11348 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATG 11407 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT-TTGCATCAAA 122837 |||||||| || ||||| | | ||| || | | | || ||| ||| | || | Sbjct 11408 CCCTCCACGGTTGCGAACGCCAGCACGCGCTCCGGGTACGA-CGACACTCGCGGGTCGCA 11466 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 ||| || | ||||| | ||| ||||||| | ||| || | || | |||||| | Sbjct 11467 CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGAATCGTATCGATGGCACGCAG 11526 Query 122898 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 122939 | || | ||| || | ||||||| ||||| ||||||| Sbjct 11527 CAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAAT 11568 >seq807 Length=21995 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 1102 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 1043 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 1042 CCGGTAGGAGCTT 1030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627957939326400