Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq7744 150 2e-31 seq584 138 1e-27 >seq7744 Length=2697 Score = 150 bits (166), Expect = 2e-31 Identities = 206/285 (72%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 || || ||| ||| | |||||||||||| ||| || || |||||||||| ||| || Sbjct 1845 GCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCA 1786 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 |||||||| || |||||||| | |||||| || | || || ||||| ||||||||||| Sbjct 1785 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATG 1726 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACT-TTGTATCAAA 130194 ||||||||| |||||||| | |||||||| | | || || ||| | || | Sbjct 1725 CCCTCCACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACTCGCGGGTCGCA 1667 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254 |||||| | |||||| ||||| || |||| | |||||||| || | ||| || | Sbjct 1666 CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAG 1607 Query 130255 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299 || | | ||| || | || ||| ||||||||| | || ||||| Sbjct 1606 CAGGTGGTCCTTCTCCGTTGCATCCTTGATGTACGTGTCAATGAG 1562 >seq584 Length=26749 Score = 138 bits (152), Expect = 1e-27 Identities = 318/470 (68%), Gaps = 18/470 (4%) Strand=Plus/Plus Query 129839 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATG 129898 || ||||| || | ||| |||| ||||| | |||| | | |||||||| ||||| Sbjct 11111 AGCAGACGGTCGGCCACGAACTCGATGTATTGGCACATGAGCCCCGAGTTCATGCCGATC 11170 Query 129899 AGGTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCAC 129957 || | ||| ||||||| ||| | |||| | | ||| || ||| || || ||||| Sbjct 11171 AGCTCCACA-GGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCAC 11229 Query 129958 GATGGCGTGAATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC----- 130011 ||| |||| | | | ||| | ||| | || || |||| |||| | Sbjct 11230 GATCTCGTGCACGCGGCTCTCCGGCAGCT----TGTTCACCAGCTTG--GAGTACATGAG 11283 Query 130012 -CACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACA 130070 |||| | || ||| ||| | |||||||||||| ||| || || |||||||||| || Sbjct 11284 GCACG-CGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCA 11342 Query 130071 GACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGA 130130 | || |||||||| || |||||||| | |||||| |||| || || ||||| ||||||| Sbjct 11343 GGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGA 11402 Query 130131 AGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACT-TTGTA 130189 |||| |||||||| |||||||| | | ||||| | | || || ||| | Sbjct 11403 AGATGCCCTCCACGGTTGCGAACGCCAGCACGCGCTCCGGGTACGA-CGACACTCGCGGG 11461 Query 130190 TCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCT 130249 || ||||||| | |||||| ||||| || |||| | |||||| | || | ||| || Sbjct 11462 TCGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGAATCGTATCGATGGCA 11521 Query 130250 TCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299 | || | | ||| || | | ||| ||||||||| | || ||||| Sbjct 11522 CGCAGCAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAG 11571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618362271029040