Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14]
9,434 sequences; 74,863,594 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq7744 150 2e-31
seq584 138 1e-27
>seq7744
Length=2697
Score = 150 bits (166), Expect = 2e-31
Identities = 206/285 (72%), Gaps = 2/285 (1%)
Strand=Plus/Minus
Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075
|| || ||| ||| | |||||||||||| ||| || || |||||||||| ||| ||
Sbjct 1845 GCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCA 1786
Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135
|||||||| || |||||||| | |||||| || | || || ||||| |||||||||||
Sbjct 1785 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATG 1726
Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACT-TTGTATCAAA 130194
||||||||| |||||||| | |||||||| | | || || ||| | || |
Sbjct 1725 CCCTCCACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACTCGCGGGTCGCA 1667
Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254
|||||| | |||||| ||||| || |||| | |||||||| || | ||| || |
Sbjct 1666 CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAG 1607
Query 130255 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299
|| | | ||| || | || ||| ||||||||| | || |||||
Sbjct 1606 CAGGTGGTCCTTCTCCGTTGCATCCTTGATGTACGTGTCAATGAG 1562
>seq584
Length=26749
Score = 138 bits (152), Expect = 1e-27
Identities = 318/470 (68%), Gaps = 18/470 (4%)
Strand=Plus/Plus
Query 129839 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATG 129898
|| ||||| || | ||| |||| ||||| | |||| | | |||||||| |||||
Sbjct 11111 AGCAGACGGTCGGCCACGAACTCGATGTATTGGCACATGAGCCCCGAGTTCATGCCGATC 11170
Query 129899 AGGTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCAC 129957
|| | ||| ||||||| ||| | |||| | | ||| || ||| || || |||||
Sbjct 11171 AGCTCCACA-GGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCAC 11229
Query 129958 GATGGCGTGAATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC----- 130011
||| |||| | | | ||| | ||| | || || |||| |||| |
Sbjct 11230 GATCTCGTGCACGCGGCTCTCCGGCAGCT----TGTTCACCAGCTTG--GAGTACATGAG 11283
Query 130012 -CACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACA 130070
|||| | || ||| ||| | |||||||||||| ||| || || |||||||||| ||
Sbjct 11284 GCACG-CGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCA 11342
Query 130071 GACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGA 130130
| || |||||||| || |||||||| | |||||| |||| || || ||||| |||||||
Sbjct 11343 GGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGA 11402
Query 130131 AGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACT-TTGTA 130189
|||| |||||||| |||||||| | | ||||| | | || || ||| |
Sbjct 11403 AGATGCCCTCCACGGTTGCGAACGCCAGCACGCGCTCCGGGTACGA-CGACACTCGCGGG 11461
Query 130190 TCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCT 130249
|| ||||||| | |||||| ||||| || |||| | |||||| | || | ||| ||
Sbjct 11462 TCGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGAATCGTATCGATGGCA 11521
Query 130250 TCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299
| || | | ||| || | | ||| ||||||||| | || |||||
Sbjct 11522 CGCAGCAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAG 11571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618362271029040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |