Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1023 176 5e-39 seq7744 134 2e-26 seq584 129 7e-25 >seq1023 Length=18726 Score = 176 bits (194), Expect = 5e-39 Identities = 426/634 (67%), Gaps = 17/634 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||| | ||||||||||| | || || || | |||||| | | | Sbjct 3925 CCGCAGCAAATGATTATGCGCGTGGCACTTGGCATCCACAAGAGCAACATTGCGGCCGCC 3866 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCA----ACACCAACCCT 104337 ||||||| ||||| ||||| ||| ||||| |||||||| || || || || Sbjct 3865 CTGGAGACGTACGAGCTCATGTCGCAA---ATGTTT-TTCACGCATGCCACCCCGACACT 3810 Query 104338 CTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 || || || || || || | || ||| |||| ||||||||| | |||| | || Sbjct 3809 TTTTAACGCCGGCACGCCGCGCCCACAACTGTCGTCTTGCTTCCTATTGGCCATGCAAGA 3750 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457 |||||||| | || || || | || | | | | ||||| ||||| || ||||| Sbjct 3749 CGACTCAATTGAAGGCATTTACGACACGTTAAAGCAATGTGCCTGTATCTCTAAATGGGC 3690 Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGA 104516 || |||||||| || || || | | |||||| || | || || || || | Sbjct 3689 CGGAGGTATTGGCATCAGTATGCACAACATCCGAGCCACCAACAGCTAC-ATCCGAGGCA 3631 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | || || || |||| || || || ||||| || || ||||||| ||| ||||| | Sbjct 3630 CGAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGGGTGTTTAACGACACCGCGCGGT 3571 Query 104577 ATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | || | || | || | || ||||| || |||| ||||| | ||||| |||| Sbjct 3570 ACGTGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCTTCGCCATCTATTTGGAGCCTTGGC 3511 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| | | |||||| | || | ||| ||||| || ||||| | | | | Sbjct 3510 ACGCAGATGTGTTCGAGTTCTTGGACCTCCGTAAGAACCACGGCAACGAGTTG-CACCGC 3452 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || ||||| || |||| ||| || ||| | || ||||| ||||||||||| || || | Sbjct 3451 GCTCGCGACCTGTTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAGAGGGTGGAAGCC 3392 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811 | |||||| ||| ||||||||| || || |||| ||||| |||| || ||| | ||| Sbjct 3391 AATGGCAAGTGGAGTCTCTTTTGCCCTAACGAGGCCCCTGGACTCTATGAGTGCTG-GGG 3333 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG 104845 || || || || ||||| || |||||||||| Sbjct 3332 CGACGAATTCGAGGCCCTCTATGAAAAGTACGAG 3299 >seq7744 Length=2697 Score = 134 bits (148), Expect = 2e-26 Identities = 193/270 (71%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||||| | |||||| | || || | |||||| | Sbjct 1562 CTCATTGACACGTACATCAAGGATGCAACGGAGAAGGACCACCTGCTGCGTGCCATCGAT 1621 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC---AAAG 94788 || | |||||| | | ||||||||| | ||||| | ||||||| || | | | Sbjct 1622 ACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTG 1681 Query 94789 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 ||| ||| || | ||||| || | || || || ||| ||||| ||||||||||| Sbjct 1682 TCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCAGCTGTGGAGGGCATCTTCTTCTC 1737 Query 94848 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 || || |||||| | || | |||||||||||||| || |||||||| || || |||| Sbjct 1738 GGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTT 1797 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| |||||||| ||| ||||||||||| Sbjct 1798 CTCGAACGAGCTGATCAGCCGTGACGAGGG 1827 >seq584 Length=26749 Score = 129 bits (142), Expect = 7e-25 Identities = 192/270 (71%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||||| | |||||| | || || | |||||| | Sbjct 11571 CTCATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGAT 11512 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC---AAAG 94788 || |||||||| | | ||||||||| | ||||| | ||||||| || | | | Sbjct 11511 ACGATTCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTG 11452 Query 94789 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 ||| ||| || | ||||| | | || || || || ||||| ||||||||||| Sbjct 11451 TCGTCGTACC----CGGAGCGCGTGCTGGCGTTCGCAACCGTGGAGGGCATCTTCTTCTC 11396 Query 94848 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 || || |||||| | || | |||||||||||||| || |||||||| || || |||| Sbjct 11395 GGGCTCGTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTT 11336 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| |||||||| ||| ||||||||||| Sbjct 11335 CTCGAACGAGCTGATCAGCCGTGACGAGGG 11306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583192018970160