Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq511 161 3e-34 seq681 131 5e-25 seq583 96.9 1e-14 seq1050 95.1 4e-14 seq2249 91.5 4e-13 seq163 89.7 2e-12 >seq511 Length=29117 Score = 161 bits (178), Expect = 3e-34 Identities = 928/1471 (63%), Gaps = 16/1471 (1%) Strand=Plus/Minus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || || ||| | || || || || || || |||| ||| ||||| || || || || || Sbjct 20196 GGCATTGATCTGGGCACGACGTACTCGTGCGTTGGTGTGTGGCAGAACGACCGCGTGGAG 20137 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || ||||| || || ||| | || || || || ||||| || || || || || Sbjct 20136 ATCATCGCCAATGACCAGGGCAACCGCACCACCCCGTCGTACGTGGCGTTCACGGATACC 20077 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| |||| |||||| | || || || |||| ||| || | | || ||||| Sbjct 20076 GAGCGTCTGATCGGTGATGCGGCCAAGAACCAAGTGGCTATGAACGCCCACAACACGGTG 20017 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTA 349444 ||||||| ||||| || || || | | || | ||| | || || || | Sbjct 20016 TTTGATGTCAAGCGCCTCATCGGCCGCAAGTTCACGGACCCAGAAGTGCAGTCGGACATC 19957 Query 349445 AAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT-GAGGTTGA 349503 || || | || || | || || ||| || || | | | | ||| | Sbjct 19956 AAGCACTGGCCGTTCAAAGTGACTCGTGGCC-CGGAGAACAAGCCTCAAGTCGTGGTGCA 19898 Query 349504 ATATAAAGGTGAA-CAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTA 349562 | ||| | || | || || || ||||| || || || || ||||| | | | Sbjct 19897 GTTTAAGTGCGAGTCCAAGACG-TTCCAGCCCGAGGAGATCTCGTCCATGGTGCTGATCA 19839 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | ||| || || || || || || | || | ||| | |||| || | || | Sbjct 19838 AGATGCGCGAGATCGCCGAGGCGTACATCGGCAAGCAAGTGAAGAATGCCGTGGTGACGG 19779 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682 | || || ||||| || || | ||||| || || || || |||||| || || | Sbjct 19778 TGCCGGCGTATTTCAACGACTCGCAGCGCCAAGCTACGAAGGACGCTGGCGCTATCGCTG 19719 Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742 || | || || || | || || || || || || ||||| || ||||| || || || | Sbjct 19718 GGCTGAACGTCCTGCGTATCATCAACGAGCCGACGGCTGCTGCCATTGCCTACGGCCTGG 19659 Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 | || | | | | | || | || | || || |||||| | || || || || |||| Sbjct 19658 ACAAGAAGGGCGGC---GAGCACAACGTGCTGATCTTTGATCTGGGAGGCGGAACGTTTG 19602 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 | || || || || || | ||||| || || || || || || || || || || || | Sbjct 19601 ACGTCTCGCTCCTTACGATCGAAGAAGGCATCTTCGAGGTGAAGGCCACCGCAGGCGACA 19542 Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTA 349922 | || | ||||| ||||| ||||| || ||||| || | | || || | ||||| | Sbjct 19541 CGCACTTGGGTGGCGAAGACTTTGACAACCGTCTGGTCGAGTACTTCGTGACCGAATTCA 19482 Query 349923 AGCGTCAAGCTAAA-ATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACT 349981 |||| ||||| | ||| | | || | | || |||||||| || | || Sbjct 19481 AGCG-CAAGCACCGCAAGGATCTAACCGGGAACTCGCGTGCGATGCGTCGTCTCCGTACG 19423 Query 349982 GCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGAT 350041 ||||| || || || ||||| | | || || | | ||| | | | |||| || ||| Sbjct 19422 GCGTGCGAGCGCGCGAAGCGAACGCTGTCCACTTCGGCGCAAGCGTATCTTGAGATCGAT 19363 Query 350042 TCTCTTGCTG-ATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATT 350100 || ||| || | || | || ||| || | ||||| ||||||||||| || || | Sbjct 19362 TCG-TTGTTGGACGGTATCGACTTCAACTCGACCATTACGCGTGCTCGGTTCGAGGATCT 19304 Query 350101 ATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAA 350160 || | || | || | || ||||| ||||||| | || || || | || Sbjct 19303 GTGCAACGAGTTCTTCCGCAAGACGATGGACCCTGTGGCGCAGGTGTTGCGGGACTCGAA 19244 Query 350161 AATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAA 350220 |||| || | || | | || || ||| | || || || || || ||||| || || Sbjct 19243 GCTGTCGAAGAGCCAAGTGAACGAGGTGGTTCTGGTCGGAGGGTCGACTCGTATCCCGAA 19184 Query 350221 AGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATC 350279 ||| || ||||| | || ||||| |||||||| || | ||| || || || || | Sbjct 19183 AGTGCAGCAGTTGTTGATGGACTTTTTCAATGGCAAGGAGCTGTTCAAG-TCGATCAACC 19125 Query 350280 CAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAGA 350339 | || ||||| || || ||||| || | || || || |||| || ||| ||| | Sbjct 19124 CGGACGAAGCAGTCGCCTATGGAGCCACCGTGCAAGCCGCTATCCTAAGTGGCAATGACT 19065 Query 350340 GTTC--TAAAATTG-ATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAG 350396 || || ||| | ||||| |||| || || || | || || |||||||| || | Sbjct 19064 CGTCCGCCAAGTTGCAGGATCTGCTACTGCTGGACGTGGCCCCGCTGTCGCTTGGGTTGG 19005 Query 350397 AAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAA 350456 | || |||||| ||| ||||| || || || | || | || | ||| | || | Sbjct 19004 AGACCGCTGGTGGAGTCATGACGAAACTCATCCCGCGTAACACGACGATTCCTTCCAAGA 18945 Query 350457 AGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTG 350516 || | || | || || || | |||||| || ||| | | ||| ||||| || || | Sbjct 18944 AGACGCAGTCGTTCTCGACGTATGCAGACAACCAGTCCGGGGTGTTGATTCAGGTGTTCG 18885 Query 350517 AAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAAA 350576 | || || || | || || ||| || ||| ||| | || | || | | Sbjct 18884 AGGGCGAGCGCACAATGACCCGTGACAATCATCTACTGGGAAAGTTCAATCTGGACGGCA 18825 Query 350577 TTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATG 350636 | || || |||||| | || || || ||||| || || | |||||| ||||| || | Sbjct 18824 TCCCGCCCATGCCTCGCGGTGTCCCGCAGATCGACGTAACGTTCGATGTTGATGTCAACG 18765 Query 350637 GTATTTTAAATGTTACCGCAGTTGAAAAATC 350667 | ||||| || || | || || || || || Sbjct 18764 GCATTTTGAACGTGTCAGCCGTGGAGAAGTC 18734 >seq681 Length=24184 Score = 131 bits (144), Expect = 5e-25 Identities = 458/710 (65%), Gaps = 9/710 (1%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || || || || || ||||| || || || | |||||| || || || || || Sbjct 22039 GCCGTGATCACGGTGCCCGCCTACTTCAACGACTCGCAGCGTCAGGCTACCAAGGACGCC 21980 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || | || || || | || || || || ||||| || || || ||| Sbjct 21979 GGTGCCATTGCCGGTCTCAACGTCCTGCGTATCATCAACGAGCCCACGGCCGCTGCCATT 21920 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || || || || | | | | || || | || || || || | ||| Sbjct 21919 GCCTACGGTCTGGACAAGAAGGGCGGT---GAGCGTAACGTGCTGATCTTCGACCTGGGT 21863 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 || ||||| || ||||| || || || | |||| ||||| || || || || || || Sbjct 21862 GGCGGTACCTTCGATGTGTCGCTGCTGTCCATTGAGGAGGGCATCTTCGAGGTGAAGGCC 21803 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 ||||||||||| || || || ||||| || || || || || ||||| || || || Sbjct 21802 ACTGCTGGTGACACGCACCTGGGTGGTGAGGACTTCGACAACCGTCTGGTGGACCACTTC 21743 Query 349910 GTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCG 349968 | || || ||||| ||||| | || || || || | | || | || Sbjct 21742 ACGCAGGAGTTCAAGCG-CAAGCACCGCAAGGACATCACGGAGAACCAGCGCGCTCTCCG 21684 Query 349969 TCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTC 350028 ||| || ||||||| || || |||||||||||| | | || || | |||| | | Sbjct 21683 TCGTCTGCGAACTGCTTGCGAGCGTGCTAAGCGTACGCTTTCGTCGTCGGCCCAGGCTTA 21624 Query 350029 TATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCG 350088 ||||| || || ||||| ||||||| || ||| || | || || |||||||| Sbjct 21623 CATTGAGATCGACTCTCTGTTCGATGGCATTGACTTCAACTCGACCATCACCCGTGCTCG 21564 Query 350089 GTTTGAAGAATTATGTATGGATCTTTTTAGAGCA--ACAATGGATCCTGTGGAAAAAGTA 350146 || || || |||| || | | ||| || ||||| || ||||| || || Sbjct 21563 TTTCGAGGA--CATGTGCGGCGACTACTTCCGCAAGACCATGGAGCCCGTGGAGAAGGTC 21506 Query 350147 TTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCT 350206 | || || || ||||||| | ||| | | || || || | || ||||| || Sbjct 21505 CTCCGTGACGCCAAGCTGTCCAAGAGCCAGGTGCACGAGGTCGTCCTGGTCGGTGGCTCC 21446 Query 350207 ACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCT 350266 || ||||| || || || || ||| | || || || || || || ||||| || || Sbjct 21445 ACCCGTATCCCCAAGGTGCAGCAGCTGCTGTCGGACTTCTTCAACGGCAAGGAGCCCAAC 21386 Query 350267 AGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316 | || || || || ||||| ||||| || || ||||| | || ||||| Sbjct 21385 AAGTCGATCAACCCTGATGAGGCTGTCGCCTACGGTGCCACCGTCCAGGC 21336 >seq583 Length=28205 Score = 96.9 bits (106), Expect = 1e-14 Identities = 76/90 (84%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 235873 GATGTCGTTCAATATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAG 235932 ||||| ||| | ||| |||||||||| |||| ||||||| ||||||||| ||||||||| Sbjct 11904 GATGT-GTTGAGTATCCGGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAG 11962 Query 235933 AGGTACCGGGATCAAAACCCAGCATCTCCA 235962 |||||| |||||| | |||| || |||||| Sbjct 11963 AGGTACAGGGATCGATACCCTGCTTCTCCA 11992 Score = 84.2 bits (92), Expect = 7e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 235892 GGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAACC 235951 |||||||| |||| ||||||| ||||||||| ||||||||||||||| ||| || | ||| Sbjct 11169 GGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGGTCGATACC 11228 Query 235952 CAGCATCTCCA 235962 | || |||||| Sbjct 11229 CTGCTTCTCCA 11239 >seq1050 Length=18215 Score = 95.1 bits (104), Expect = 4e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || || || || || || ||||| || || || || || || Sbjct 5228 CATGCCGCCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 5169 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || || || || || || || || ||||| || || ||||| || || Sbjct 5168 GCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGG 5109 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || |||||||| || || || || |||||||| || || || || Sbjct 5108 CGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATCGAGTCCGACGGCTC 5049 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || | ||||| || || || || || || |||||||||||| Sbjct 5048 CACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCATT 4997 >seq2249 Length=9071 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 3350 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 3291 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 3290 CCCTGCTTCTCCA 3278 >seq163 Length=48366 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 3175 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 3234 Query 74548 TCGGGCA 74554 ||||||| Sbjct 3235 TCGGGCA 3241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515071246465502