Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2043 197 1e-45 seq671 102 7e-17 >seq2043 Length=11907 Score = 197 bits (218), Expect = 1e-45 Identities = 409/603 (68%), Gaps = 12/603 (2%) Strand=Plus/Plus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| ||||| || || | | || || ||||| || || || | |||| Sbjct 5048 AGCTGCTTCTGGAGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGG 5107 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983 |||||||| || || | || || | || || || |||| ||| || | | |||| Sbjct 5108 ACAAACTCGCCAGGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAG 5167 Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043 ||||||||||| || || || || || |||||||| |||| | |||||| | ||| || Sbjct 5168 CTGGCGATGTTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAG 5227 Query 30044 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATG 30103 || | ||| |||||| |||||| ||||| || | ||||||||| || || ||||| Sbjct 5228 GACAACTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT- 5286 Query 30104 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCT-TCTGGGT 30158 | || || || || ||||| || ||| | ||| || | ||| || | | Sbjct 5287 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATT 5343 Query 30159 TGTTC-CTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 30217 ||| | | | | ||| | | | ||||| ||||| ||| || | |||||| Sbjct 5344 TGTGCGCAGCTT--GTCAATAACCTCAGCGAGCTGGTCCACGCCCTGACCAGTGTAGTCG 5401 Query 30218 GCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCC 30277 || |||||||||||||| |||||| ||||| | ||||||||| ||||| |||||||| Sbjct 5402 GCGTGCATGTCCGTGTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCG 5461 Query 30278 AGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTG 30337 ||||| || |||||| || | || | |||||| | | || | || || ||| Sbjct 5462 AGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGATCCATTG 5521 Query 30338 GCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACG 30397 |||||||||| | | ||||||| ||| | | | ||| || |||| | Sbjct 5522 CCGTCCCAGATGTGGATATCCTTCTCCTGCAGCGTGTGCGCACTCGTGTCGCCACTGATG 5581 Query 30398 AACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGA 30457 |||||||||||||||||| | ||| | ||| ||||| | |||||||||||| | ||| Sbjct 5582 AACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAAGGGG 5641 Query 30458 AAC 30460 ||| Sbjct 5642 AAC 5644 >seq671 Length=24399 Score = 102 bits (112), Expect = 7e-17 Identities = 206/306 (67%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 49034 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 49093 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 16892 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 16833 Query 49094 GCCCCTCTCGACCCGAAAGGGGTCGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 49153 || | || ||| | ||| ||| | | ||| ||||| || ||||| | |||||| Sbjct 16832 TCCGCGCTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 16773 Query 49154 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 49213 | |||||||| ||| | ||| ||||| || ||| || || | || || || || || Sbjct 16772 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTGCTTGAGCGCGAGTCC 16713 Query 49214 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGGCCAGGTCCGTCTT 49273 ||| | || ||||| | ||||| ||| ||| | | | ||||||||||||| Sbjct 16712 GGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 16653 Query 49274 TACCAGGGCCCTGTCGAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTCGTAACC 49333 || ||| || || || | ||||| |||| | || ||| |||| |||||| ||| Sbjct 16652 GACGAGGCCCTTGCCGCCCGCGGGGATCACGGCGTCGTAAGCAGCCGACAGGTCCAGACC 16593 Query 49334 CGCGGC 49339 |||||| Sbjct 16592 CGCGGC 16587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406263683699928