Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq2494 156 2e-33 >seq2494 Length=8003 Score = 156 bits (172), Expect = 2e-33 Identities = 334/497 (67%), Gaps = 9/497 (2%) Strand=Plus/Minus Query 66243 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 66302 |||| ||||||||| || ||| || | ||| | | ||||||||||| || ||||| ||| Sbjct 4299 GCCTTCATCGACGCAGAACACGCCATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGAC 4240 Query 66303 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66362 | ||| || || ||||||||| | ||||| | || |||||||||| ||| Sbjct 4239 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGAC 4180 Query 66363 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTG 66422 ||| ||| ||| || | | || | |||| || | ||| |||||| || |||||| Sbjct 4179 ACGCTCATCAGGTCGGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCAGCGCTGGTG 4120 Query 66423 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 66482 ||||| || ||||| || || || || || ||| || | | ||||| ||||| ||| Sbjct 4119 CCGCGTGCGGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCACTGCAGGCGCGACTC 4060 Query 66483 ATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACG 66539 ||| ||||| |||| |||||||| || | | |||| |||| ||| | | Sbjct 4059 ATGAGTCAGGCGCTGCGAAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 4002 Query 66540 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACC 66599 ||| | |||||| | ||| ||||| | || | | | || ||| | ||| Sbjct 4001 -TCTTCCTGAACCAGATTCGCCAGAAGGTGGGGATCAT---CTTCGGATCTCCTGAGGTT 3946 Query 66600 ACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATC 66659 || |||| || | ||| || | | |||||| || || | |||| | ||||||| Sbjct 3945 ACGTCGGGTGGAACAGCTCTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGCAAG 3886 Query 66660 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAG 66719 | || ||||| ||||| ||| |||||||||| || ||||||||| | |||| Sbjct 3885 ACGGCCATCAAGGAGGGCGACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAAG 3826 Query 66720 AACAAGCTGGCCCCGCC 66736 ||||| || ||| |||| Sbjct 3825 AACAAACTTGCCTCGCC 3809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240932295172200