Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2043 242 3e-59 >seq2043 Length=11907 Score = 242 bits (268), Expect = 3e-59 Identities = 477/696 (69%), Gaps = 11/696 (2%) Strand=Plus/Plus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAG 6565 |||||||| || ||| ||| ||||| || ||||| |||||| ||||| || || Sbjct 5024 GGGAACGGGCGCGGCGATCGAGTAAGCTGCTTCTGGAGCGGCTCGACATGGTTAAGATAC 5083 Query 6566 ATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAG 6623 | || ||||| || | |||| | || | ||| ||||| || || || || | Sbjct 5084 ACGTGGGCATCACCAATAACGT--GGACAAACTCGCCAGGCTTCAGTCCACTCACCTGTG 5141 Query 6624 CGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGT 6683 | |||| ||| |||| ||||| || || |||||||||||||| || | ||||||| Sbjct 5142 CTATCAGTCGCGTAAGCAACGCGTAGCTGGCGATGTTGAACGGCACGCCAAGTCCCATGT 5201 Query 6684 CTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGA 6743 | |||| || || || | ||||||||||| ||| || | || |||||||| ||||||| Sbjct 5202 CGGCCGAGCGCTGGTACATCTGGCAGGACAACTCGCCGTCGGCCACGTAGAACTGGCAGA 5261 Query 6744 GGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCA 6803 |||||||||| |||||||||||| | ||||||| ||| |||||||| ||| || Sbjct 5262 ACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATCCGCCGGATTCCACGCCGACAGCA 5321 Query 6804 CGATCCTTCTGTC-ATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTC 6861 |||||| | ||| || | || || || |||| || || | | || |||||||| Sbjct 5322 CGATCCGACGGTCGGTCGGATTTGTGC-GCAGCTTGTCAATAACCT-CAGCGAGCTGGTC 5379 Query 6862 CGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCA 6921 | | ||||| || | ||||| || | | || |||| || ||||| || | ||| Sbjct 5380 CACGCCCTGACCAGTGTAGTCGGCGTGCATGTCCGTGTACTTTGCTCCAAAATGACGCCA 5439 Query 6922 CTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTC 6981 |||||| ||||||||||| || | |||||| | ||||| || | | || || |||| Sbjct 5440 CTGGAAGCCGTAGACCGGTCCGAGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTC 5499 Query 6982 CAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTT 7041 |||| | || || || || | |||||||||| | | || | ||| | Sbjct 5500 CAGATACTCCCGCGATCCATTGCCGTCCCAGATGTGGATATCCTTCTCCTGCAGCGTGTG 5559 Query 7042 GGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACAC 7101 | ||||| | || || | |||||||||||||||||| ||||||| |||| | || Sbjct 5560 CGCACTCGTGTCGCCACTGATGAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGAC 5619 Query 7102 ACGTTTCGTCGTCAGC-AGCGGA--AATTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCC 7158 || || ||||| ||| || ||| | | ||||| || || | || ||| | || Sbjct 5620 GCGCTTGGTCGTGAGCAAGGGGAACACGTTGCCCCTCAGACTGAAGCGCATCTGCGCTCC 5679 Query 7159 GAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCC 7194 ||| || || || ||||| || || || || || || Sbjct 5680 GAAGACCGACAGCGTCCCTGTTCCCGTGCGATCTCC 5715 Score = 242 bits (268), Expect = 3e-59 Identities = 477/696 (69%), Gaps = 11/696 (2%) Strand=Plus/Minus Query 34151 GGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTT 34210 || || || || || || ||||| || || || ||||| | ||| || | || || Sbjct 5715 GGAGATCGCACGGGAACAGGGACGCTGTCGGTCTTCGGAGCGCAGATGCGCTTCAGTCTG 5656 Query 34211 CGGGGCGAATT--TCCGCT-GCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 ||||| | | ||| || ||| ||||| || || || | |||| ||||||| ||| Sbjct 5655 AGGGGCAACGTGTTCCCCTTGCTCACGACCAAGCGCGTCTTCTGGCGCGGCGTGGCGGAG 5596 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 ||||||||||||||| | || || | ||||| | | ||| | || | Sbjct 5595 GAGCTGCTGTGGTTCATCAGTGGCGACACGAGTGCGCACACGCTGCAGGAGAAGGATATC 5536 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 | |||||||||| | || || || || | |||||||| || || | | || ||| Sbjct 5535 CACATCTGGGACGGCAATGGATCGCGGGAGTATCTGGACAGTCGAGGACTGCAGTCGCGG 5476 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 || | |||||| | || ||||||||||| ||||||||| | || ||||| || |||| Sbjct 5475 GAAGTTGGCGACCTCGGACCGGTCTACGGCTTCCAGTGGCGTCATTTTGGAGCAAAGTAC 5416 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGA 34506 || | | || ||||| | || ||||| | ||||||||| || | | || || || Sbjct 5415 ACGGACATGCACGCCGACTACACTGGTCAGGGCGTGGACCAGCTCGCTG-AGGTTATTGA 5357 Query 34507 CACCTTGAAGCGGAACCCTGAT-GACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGG 34565 || || || || | || ||| | |||||||| ||| |||||||| ||| || Sbjct 5356 CAAGCTGC-GCACAAATCCGACCGACCGTCGGATCGTGCTGTCGGCGTGGAATCCGGCGG 5298 Query 34566 ATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATG 34625 ||||| | |||||||||||| |||||||||| ||||||| |||||||| || | | Sbjct 5297 ATCTCAATGAGATGGCGCTCCCGCCGTGCCACATGTTCTGCCAGTTCTACGTGGCCGACG 5238 Query 34626 GGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCA 34685 | ||| ||||||||||| | || || || |||| |||||||| | || |||||||||| Sbjct 5237 GCGAGTTGTCCTGCCAGATGTACCAGCGCTCGGCCGACATGGGACTTGGCGTGCCGTTCA 5178 Query 34686 ACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTG 34745 |||| || || ||||| |||| ||| |||| || || || || || |||| Sbjct 5177 ACATCGCCAGCTACGCGTTGCTTACGCGACTGATAGCACAGGTGAGTGGACTGAAGCCTG 5118 Query 34746 GGGAGCTGGTGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCT 34803 | ||| | || | |||| | || ||||| || | || || ||||| |||||| ||| Sbjct 5117 GCGAGTTTGTCC--ACGTTATTGGTGATGCCCACGTGTATCTTAACCATGTCGAGCCGCT 5060 Query 34804 CCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCC 34839 || || ||||| ||| ||| || |||||||| Sbjct 5059 CCAGAAGCAGCTTACTCGATCGCCGCGCCCGTTCCC 5024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448209538656480