Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq2043 149 5e-31 seq671 104 2e-17 >seq2043 Length=11907 Score = 149 bits (164), Expect = 5e-31 Identities = 385/590 (65%), Gaps = 10/590 (2%) Strand=Plus/Plus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 ||||| || || |||| ||| || ||||| ||||| || | |||||||||||| || Sbjct 5060 AGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGGACAAACTCGCCA 5119 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 || | || || | || || || |||| ||| || | | ||||||||||||||| Sbjct 5120 GGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAGCTGGCGATGTTG 5179 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827 || ||||| || || |||||||| | || | |||||| | |||||| || | ||| ||| Sbjct 5180 AACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCGCCG 5239 Query 29828 TCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAG 29884 ||| |||||| ||||| | ||||| |||||||| || || ||||| | | Sbjct 5240 TCGGCCACGTAGAACTGGCAGAACATG---TGGCACGGCGGGAGCGCCATCTCATTGAGA 5296 Query 29885 TCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTC-TTCTGGGTTGTTC-CTGATGA 29942 || || ||||| || ||| | ||| || | ||| || | |||| | | | | Sbjct 5297 TCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATTTGTGCGCAGCT-- 5354 Query 29943 GGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNN 30002 ||| | | | ||||| ||||| ||| || | |||||| | Sbjct 5355 TGTCAATAACCTCAGCGAGCTGGTCCACGCCCTGACCAGTGTAGTCGGCGTGCATGTCCG 5414 Query 30003 NNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30062 | ||||| | ||||||||| ||||| |||||||| ||||| || ||| Sbjct 5415 TGTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCGAGGTCGCCAACTT 5474 Query 30063 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30122 ||| || | || | |||||| | | || | || || ||| |||||||||| | Sbjct 5475 CCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGATCCATTGCCGTCCCAGATGT 5534 Query 30123 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCT 30182 | ||||||| ||| | | | ||| || |||| |||||||||||||| Sbjct 5535 GGATATCCTTCTCCTGCAGCGTGTGCGCACTCGTGTCGCCACTGATGAACCACAGCAGCT 5594 Query 30183 CCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30232 ||||| | ||| | ||| ||||| | |||||||||||| | ||| ||| Sbjct 5595 CCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAAGGGGAAC 5644 >seq671 Length=24399 Score = 104 bits (114), Expect = 2e-17 Identities = 195/284 (69%), Gaps = 2/284 (1%) Strand=Plus/Minus Query 49862 ACTCGTATCT-CTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGCA 49920 ||||| |||| |||||| | |||||| || | | ||| || | || ||| | ||| | Sbjct 16869 ACTCG-ATCTTCTCGAGGATGAGCTGCGCCACGCGGTCTCCGCGCTTGACGGGGAAGTCC 16811 Query 49921 TCACACCCAAAGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACC 49980 || | | ||| ||||| || ||||| | |||||| | |||||||| ||| | ||| Sbjct 16810 TCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACG 16751 Query 49981 CCGGCACCGACGTCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCG 50040 ||||| || ||| || |||| || || || || ||||| | || ||||| | || Sbjct 16750 CCGGCGCCCGTGTCGATGAACTGCTTGAGCGCGAGTCCGGAGCGCGGCGCCACGCGCGCG 16691 Query 50041 TAGAGGCCCGGGGGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAG 50100 ||| ||| ||| | | | | ||||||||||| || ||| || ||||| | | Sbjct 16690 TAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCCGCG 16631 Query 50101 GGGACCACGACGGGGTGAGCGGCCGCCAGGTCGTAACCGGCGGC 50144 |||| |||| || || ||| |||| |||||| ||| ||||| Sbjct 16630 GGGATCACGGCGTCGTAAGCAGCCGACAGGTCCAGACCCGCGGC 16587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406116500624524