Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq2043 183 2e-41 seq671 105 5e-18 >seq2043 Length=11907 Score = 183 bits (202), Expect = 2e-41 Identities = 406/603 (67%), Gaps = 12/603 (2%) Strand=Plus/Plus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 ||||| ||| ||||| || || || | || || ||||| || || || | |||| Sbjct 5048 AGCTGCTTCTGGAGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGG 5107 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 27249 |||||||| || || | || || | || || || |||| ||| || | | |||| Sbjct 5108 ACAAACTCGCCAGGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAG 5167 Query 27250 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 27309 ||||||||||| || || || || || |||||||| |||| | |||||| | ||| || Sbjct 5168 CTGGCGATGTTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAG 5227 Query 27310 GAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATG 27369 || | ||| || ||| ||||| ||||| || | ||||||||| || || ||||| Sbjct 5228 GACAACTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT- 5286 Query 27370 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCT-TCTGGGT 27424 | || || || || ||||| || ||| | ||| || | ||| || | | Sbjct 5287 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATT 5343 Query 27425 TGTTC-CTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 27483 ||| | | | | ||| | | | ||||| ||||| ||| || | |||||| Sbjct 5344 TGTGCGCAGCTT--GTCAATAACCTCAGCGAGCTGGTCCACGCCCTGACCAGTGTAGTCG 5401 Query 27484 ACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCC 27543 | |||||||||||||| |||||| ||||| | ||| ||||| ||||| |||||||| Sbjct 5402 GCGTGCATGTCCGTGTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCG 5461 Query 27544 AGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTG 27603 ||||| || |||||| || | || | |||||| | | || | || || ||| Sbjct 5462 AGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGATCCATTG 5521 Query 27604 GCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACG 27663 |||||||||| | | ||||||| ||| | | | ||| || |||| | Sbjct 5522 CCGTCCCAGATGTGGATATCCTTCTCCTGCAGCGTGTGCGCACTCGTGTCGCCACTGATG 5581 Query 27664 AACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGA 27723 |||||||||||||||||| | ||| | ||| ||||| | |||||||||||| | ||| Sbjct 5582 AACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAAGGGG 5641 Query 27724 AAC 27726 ||| Sbjct 5642 AAC 5644 >seq671 Length=24399 Score = 105 bits (116), Expect = 5e-18 Identities = 207/306 (68%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 44826 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 44885 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 16892 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 16833 Query 44886 GCCCCTCTTGACCCGAAAGGGGTTGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 44945 || | |||||| | ||| | | | | ||| ||||| || ||||| | |||||| Sbjct 16832 TCCGCGCTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 16773 Query 44946 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 45005 | |||||||| ||| | ||| ||||| || ||| || || | || || || || || Sbjct 16772 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTGCTTGAGCGCGAGTCC 16713 Query 45006 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGACCAGGTCCGTCTT 45065 ||| | || ||||| | ||||| ||| ||| | | ||||||||||||||| Sbjct 16712 GGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 16653 Query 45066 TACCAGGGCCCTGCCTAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTCGTAACC 45125 || ||| || |||| | ||||| |||| | || ||| |||| |||||| ||| Sbjct 16652 GACGAGGCCCTTGCCGCCCGCGGGGATCACGGCGTCGTAAGCAGCCGACAGGTCCAGACC 16593 Query 45126 CGCGGC 45131 |||||| Sbjct 16592 CGCGGC 16587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369464715216854