Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq982 122 3e-23 >seq982 Length=19217 Score = 122 bits (134), Expect = 3e-23 Identities = 197/276 (71%), Gaps = 8/276 (3%) Strand=Plus/Plus Query 31005 CCATGCACATGTGTCGCGCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGA 31064 ||||||||||||| |||| ||||||||| | |||||||||| || | | | | Sbjct 9283 CCATGCACATGTGCGTGGCCTCAATGACCACGGCCACGCCCTTGGGCTCAATGACGCCCA 9342 Query 31065 ACAGTGCGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCG--AGCATA 31122 | |||| |||||||| | ||||| || |||||||| ||||||||||| || | | Sbjct 9343 TGATGGCGTTGGCGATCTGCTTGGTGAGTCGCTCCTGCACCTGCAGGCGGCGCGAGAAGA 9402 Query 31123 CATGTCCGCCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCT 31182 | | | | | ||| || ||||||| || || | | |||||||| ||||||| Sbjct 9403 CCTCGCTGACGCGCGCGA--GCTTGCTGAGCCCGAGCACCTTGCCGTTCGGGATGTAGCC 9460 Query 31183 GATCGTG-ACCGTGCCGAAGATCGGCGCGAGGTGATGCTCGCA-ATGTGAGTAGATGGGG 31240 ||| ||| ||| |||| || |||| | | ||| |||||||| ||| ||||| | | | Sbjct 9461 GAT-GTGCACCTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATG-GAGTACAGGTCG 9518 Query 31241 ATGTCGCGCACCGTCACCATCTGGTCATGCTTCTCC 31276 ||||||||||| | ||||||| ||| || | |||| Sbjct 9519 ATGTCGCGCACGATGACCATCTCGTCGTGGTCCTCC 9554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187268618180224