Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq2043 86.0 4e-12 >seq2043 Length=11907 Score = 86.0 bits (94), Expect = 4e-12 Identities = 126/174 (72%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 1160 CGCCGGAACGTGGTATCCGCATGGAA--CGTCGGTGACCTCAGCGACATGGCACTTCACC 1217 || |||| |||| | || || ||||| || ||| | |||| || ||||| || | | Sbjct 5331 CGTCGGATCGTGCTGTCGGCGTGGAATCCGGCGG--ATCTCAATGAGATGGCGCTCCCGC 5274 Query 1218 CGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCTGC-AGGTCTAC 1276 |||||||||| | | |||| | ||||| | ||||||| | | || |||| || | ||| Sbjct 5273 CGTGCCACATGTTCTGCCAGTTCTACGTGGCCGACGGCGAGTTGTC-CTGCCAGATGTAC 5215 Query 1277 CAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGTACGCG 1330 |||||| || |||||| || || ||||||||||| |||||| |||||| Sbjct 5214 CAGCGCTCGGCCGACATGGGACTTGGCGTGCCGTTCAACATCGCCAGCTACGCG 5161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296097151760034