Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1050 140 2e-28 seq93 132 3e-26 seq1009 125 5e-24 seq1059 96.9 2e-15 seq3241 82.4 5e-11 >seq1050 Length=18215 Score = 140 bits (154), Expect = 2e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 |||| || | ||| | || ||||||||| ||||| |||||| ||||||||||| ||| Sbjct 5454 TTCCACCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGC 5395 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 || ||| |||| ||||||||||| ||||| ||||| | |||||||| || | | Sbjct 5394 TCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCG 5335 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | | || ||||| ||| ||||||||||||| | | || | ||| | | |||| Sbjct 5334 GGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCA 5275 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || | ||| || ||||| ||||| || ||||| |||||||| |||||| Sbjct 5274 CGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 5225 Score = 132 bits (146), Expect = 3e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| ||||| |||||| ||||||||||| || Sbjct 5228 CATGCCGCCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 5169 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| ||||||||||| ||||| ||||| | |||||||| || | Sbjct 5168 GCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGG 5109 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||||||||||| | | || | ||| | | || Sbjct 5108 CGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATCGAGTCCGACGGCTC 5049 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | ||| || ||||| ||||| || ||||| ||||| || ||||| Sbjct 5048 CACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCAT 4998 >seq93 Length=57835 Score = 132 bits (146), Expect = 3e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| ||||| |||||| || |||||||| || Sbjct 54862 CATGCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTC 54803 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| || |||||||| || || ||||||| ||||||||| || | Sbjct 54802 GCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 54743 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| ||||| | | | || | ||| | | || Sbjct 54742 CGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTC 54683 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | ||| |||||||| ||||| || |||||||||||||| ||||| Sbjct 54682 CACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 54632 >seq1009 Length=18926 Score = 125 bits (138), Expect = 5e-24 Identities = 146/195 (75%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| || | || ||| |||| || |||||||| || || |||| Sbjct 8114 CCTTCTGGATGTTGTAGTCCGATAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 8173 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| |||||||| || | || | || ||||| ||| || |||||||| || ||| Sbjct 8174 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 8233 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||| |||||| | ||||| |||| ||| || ||||| ||||| ||||||||||| Sbjct 8234 --CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCAC 8291 Query 44326 GAAGATTTGCATGAT 44340 ||||| |||||||| Sbjct 8292 AAAGATCTGCATGAT 8306 >seq1059 Length=18192 Score = 96.9 bits (106), Expect = 2e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| |||||||||||||| ||||||||||| || | || ||| |||| || Sbjct 11315 CACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTC 11374 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||||||| ||||| ||||||| |||||||| || Sbjct 11375 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 11410 >seq3241 Length=5680 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | || ||||| ||||| ||| || ||||| | | || |||||||| || | | Sbjct 1515 CCACCCCGCAATCTCAGCACCAAGTGCAGAGTGCTGCCGTACTGAATGTTGTAGTCCGAG 1574 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || | || |||| || |||||||| || ||||| || | ||||||||||||| ||| Sbjct 1575 AGCTTTCGACCGTCTTCAAGCTGCTTACCTGCAAAAATGATCCGCTGCTGATCTGGAGGG 1634 Query 44231 ACACCTTCCTTTTCC 44245 | ||| || | |||| Sbjct 1635 ATACCCTCTTGTTCC 1649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359949009428778