Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14]
9,434 sequences; 74,863,594 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq93 176 4e-39
seq1050 167 2e-36
seq1009 150 2e-31
seq1059 134 1e-26
seq671 98.7 9e-16
>seq93
Length=57835
Score = 176 bits (194), Expect = 4e-39
Identities = 178/229 (78%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| ||||| | |||||| |||||||| ||||||||||||||| ||||||
Sbjct 54859 GCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 54800
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| |||| || ||||||||||| ||||| ||||| ||||| ||||| | ||
Sbjct 54799 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 54740
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| |||||||| ||| | | | | ||| || |||||
Sbjct 54739 GATGCCCTCCTTGTCCTGGATCTTTTGCTT-GACGTTGTCGATCGAGTCCGACGGCTCCA 54681
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| || | ||| ||||| || |||||||||||||| ||||| ||||||||
Sbjct 54680 CGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 54632
Score = 174 bits (192), Expect = 1e-38
Identities = 178/230 (77%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| ||||| | |||||| |||||||| ||||||||||||||| ||||||
Sbjct 55087 GCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 55028
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| |||| || ||||||||||| ||||| ||||| ||||| ||||| | ||
Sbjct 55027 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 54968
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || ||| |||||| ||| |||||||| ||| | | | | ||| || |||||
Sbjct 54967 GATGCCCTCTTTGTCCTGGATCTTTTGCTT-GACGTTGTCGATCGAGTCCGACGGCTCCA 54909
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
| |||| ||| ||||| || |||||||||||||| || || |||||||||
Sbjct 54908 CGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 54859
Score = 174 bits (192), Expect = 1e-38
Identities = 178/230 (77%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| ||||| | |||||| |||||||| ||||||||||||||| ||||||
Sbjct 55315 GCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 55256
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| |||| || ||||||||||| ||||| ||||| ||||| ||||| | ||
Sbjct 55255 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 55196
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || ||| |||||| ||| |||||||| ||| | | | | ||| || |||||
Sbjct 55195 GATGCCCTCTTTGTCCTGGATCTTTTGCTT-GACGTTGTCGATCGAGTCCGACGGCTCCA 55137
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
| |||| ||| ||||| || |||||||||||||| || || |||||||||
Sbjct 55136 CGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 55087
Score = 163 bits (180), Expect = 3e-35
Identities = 175/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | |||||| |||||||| ||||||||||||||| ||||||
Sbjct 55542 CCACCACGAAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 55483
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| || ||||||||||| ||||| ||||| ||||| ||||| | ||
Sbjct 55482 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 55423
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || ||| |||||| ||| |||||||| ||| | | | | ||| || ||||||
Sbjct 55422 ATGCCCTCTTTGTCCTGGATCTTTTGCTT-GACGTTGTCGATCGAGTCCGACGGCTCCAC 55364
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| ||| ||||| || |||||||||||||| || || |||||||||
Sbjct 55363 GTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 55315
>seq1050
Length=18215
Score = 167 bits (184), Expect = 2e-36
Identities = 176/229 (77%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
|||||| || || || | |||||| |||||||| ||||||||| ||||| ||||||
Sbjct 5225 GCCGCCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 5166
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| |||| || ||||||||||||||||| || |||||||| ||||| | ||
Sbjct 5165 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 5106
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || |||||||||| || || |||||| ||| | | | | ||| || |||||
Sbjct 5105 GATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCAATCGAGTCCGACGGCTCCA 5047
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| || | ||| || || || |||||||||||||| ||||||||||||||
Sbjct 5046 CGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCAT 4998
Score = 158 bits (174), Expect = 1e-33
Identities = 174/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | |||||| |||||||| ||||||||| ||||| ||||||
Sbjct 5452 CCACCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 5393
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| || ||||||||||||||||| || |||||||| ||||| | ||
Sbjct 5392 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 5333
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| || || |||||| ||| | | | | ||| || ||||||
Sbjct 5332 ATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 5274
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| | ||| || || || |||||||||||||| ||||| |||||||||
Sbjct 5273 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 5225
>seq1009
Length=18926
Score = 150 bits (166), Expect = 2e-31
Identities = 150/192 (78%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| ||||| || || ||||| |||| |||||||||||||| ||||| |
Sbjct 8114 CCTTCTGGATGTTGTAGTCCGATAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 8173
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792
|||||||||| ||||| | || | || |||||||||| |||||| ||||| || |
Sbjct 8174 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTT-GACATTG 8232
Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851
|| | ||||| || |||||| |||| ||| || || || |||||||| ||||| ||
Sbjct 8233 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 8292
Query 41852 AAAATCTGCATG 41863
|| |||||||||
Sbjct 8293 AAGATCTGCATG 8304
>seq1059
Length=18192
Score = 134 bits (148), Expect = 1e-26
Identities = 103/122 (84%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692
|| || || || ||||| | |||||| |||||||||||||||||||| ||||| |||||
Sbjct 11295 CCACCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCC 11354
Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752
|| |||||||| |||| || ||||||||||||||||| ||||||||||| ||||| | |
Sbjct 11355 GAAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGG 11414
Query 41753 GG 41754
||
Sbjct 11415 GG 11416
>seq671
Length=24399
Score = 98.7 bits (108), Expect = 9e-16
Identities = 146/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 85788 GGCTGCTACATTCGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTG 85847
||||||||| || | || || || ||||| ||||| |||||| |||||| |
Sbjct 16683 GGCTGCTACGCGCGCGTGGCGCCGCGCTCCGGACTCGCGCTCAAGCAGTTCATCGACACG 16742
Query 85848 GGCGCCGGGGTCATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCAC 85907
|||||||| || |||||||||||||||||||| ||||| | | | || |||||||||
Sbjct 16743 GGCGCCGGCGTGATCGACGCCGACTACCGCGGCAACGTGGGCGTGATCCTGTTCAACCAC 16802
Query 85908 GGCGAAGAGGATCTGGTCGTGAGGCGAGGAGACAAGGTGGCCCAGTTCATCTGTGAAAAA 85967
| | ||||| | ||| | ||| |||||| ||||| ||| ||||| || ||
Sbjct 16803 GCGGCCGAGGACTTCCCCGTCAAGCGCGGAGACCGCGTGGCGCAGCTCATCCTCGAGAAG 16862
Query 85968 ATCCACTATTCCGACATACAAGAAGTG 85994
||| | || | || || || || |||
Sbjct 16863 ATCGAGTACCCGGAGATCCAGGAGGTG 16889
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462249482800800
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