Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1 136 4e-27 seq5 125 7e-24 seq18 116 4e-21 >seq1 Length=13391543 Score = 136 bits (150), Expect = 4e-27 Identities = 307/457 (67%), Gaps = 6/457 (1%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || || ||||| || || | ||||| || | |||||| || ||||| || | Sbjct 5642153 ACATGAGGCAAGCGAAGTCCGTGTGCATGCCCTCATCGCGGCTGATCAGCTCGTTCGAGA 5642094 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| || |||||| || || ||||| | ||| || || | | |||||| || | Sbjct 5642093 AGCTCAGACCAGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCG 5642034 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCG-CGTCT 17134 | ||||| || ||||| || | || ||||| | | || || | ||||| || | | Sbjct 5642033 AGAAGAAGATGCCCTCCACAGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACCC 5641974 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 | || | ||| || || |||| | ||||| | ||| | || ||||| || Sbjct 5641973 GCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTGACACACGGGATCGTCTCG 5641915 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| | | | || || ||| ||| | || ||||| |||||||| || Sbjct 5641914 ATGGCTCGCAGCAGGTGGTCCTTCTCCACCGCGTCCTTGATGTACGTGTCGATGAGCAGC 5641855 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 ||||| || ||||| |||||||| ||||| ||||| || ||||| ||||| || || Sbjct 5641854 GAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGCGCC 5641795 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCCGT 17372 |||| | || || || | ||| |||| || || || |||||||||||||||| Sbjct 5641794 TCCGGCACCTGCACCTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCCGT 5641737 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 |||| || ||||| || |||| | ||||| ||||| Sbjct 5641736 CGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAA 5641700 Score = 136 bits (150), Expect = 4e-27 Identities = 307/457 (67%), Gaps = 6/457 (1%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || || ||||| || || | ||||| || | |||||| || ||||| || | Sbjct 5643807 ACATGAGGCAAGCGAAGTCCGTGTGCATGCCCTCATCGCGGCTGATCAGCTCGTTCGAGA 5643866 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| || |||||| || || ||||| | ||| || || | | |||||| || | Sbjct 5643867 AGCTCAGACCAGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCG 5643926 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCG-CGTCT 17134 | ||||| || ||||| || | || ||||| | | || || | ||||| || | | Sbjct 5643927 AGAAGAAGATGCCCTCCACAGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACCC 5643986 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 | || | ||| || || |||| | ||||| | ||| | || ||||| || Sbjct 5643987 GCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTGACACACGGGATCGTCTCG 5644045 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| | | | || || ||| ||| | || ||||| |||||||| || Sbjct 5644046 ATGGCTCGCAGCAGGTGGTCCTTCTCCACCGCGTCCTTGATGTACGTGTCGATGAGCAGC 5644105 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 ||||| || ||||| |||||||| ||||| ||||| || ||||| ||||| || || Sbjct 5644106 GAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGCGCC 5644165 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCCGT 17372 |||| | || || || | ||| |||| || || || |||||||||||||||| Sbjct 5644166 TCCGGCACCTGCACCTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCCGT 5644223 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 |||| || ||||| || |||| | ||||| ||||| Sbjct 5644224 CGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAA 5644260 >seq5 Length=6830280 Score = 125 bits (138), Expect = 7e-24 Identities = 307/459 (67%), Gaps = 10/459 (2%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || || ||||| || || | |||||||| | |||||| || ||||| || | Sbjct 1397637 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGA 1397578 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| |||||||| || || ||||| | ||| || || | | ||| || || | Sbjct 1397577 AGCTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCG 1397518 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCG-CGTCT 17134 | ||||| || || || || | || ||||| | | || || | ||||| || | | Sbjct 1397517 AGAAGAAGATGCCTTCAACCGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACCC 1397458 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 | || | ||| || || |||| | || || | ||| | ||| ||||| || Sbjct 1397457 GCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCCTTCTTCTTGACGCACGGGATCGTCTCA 1397399 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCT--GTAGGTCGATTATATACGTATCGATGAGTA 17252 || || || | | | || ||| ||| || | || ||||| |||||||| | Sbjct 1397398 ATAGCGCGCAACAGGTGGTTCTTCTCCATCGTA--TCCTTGATGTACGTGTCGATGAGCA 1397341 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 | ||| | |||| ||| |||||||| ||||| ||||| || ||||| ||||| || | Sbjct 1397340 GCGAGTAGACCTCGGCGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCG 1397281 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCC 17370 | || | | || ||||| | ||| |||| || || || |||||||||||||| Sbjct 1397280 CCTCGGGCACCTGCACTTCGTTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCC 1397223 Query 17371 GTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 ||||||||| ||||| || |||| | ||||| ||||| Sbjct 1397222 GTCGCTCGCCGCGAAGAAGGCCAGCACGTGCTTGATGAA 1397184 Score = 116 bits (128), Expect = 4e-21 Identities = 305/459 (66%), Gaps = 10/459 (2%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || || ||||| || || | ||||||| | |||||| || ||||| || | Sbjct 1373847 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTTGCGGCTGATGAGCTCGTTGGAGA 1373906 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| |||||||| || || ||||| | ||| || || | | ||| || || | Sbjct 1373907 AGCTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCG 1373966 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCG-CGTCT 17134 | ||||| || || || || | || ||||| | | || || | ||||| || | | Sbjct 1373967 AGAAGAAGATGCCTTCAACCGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACCC 1374026 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 | || | ||| || || |||| | || || | ||| | ||| ||||| || Sbjct 1374027 GCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCCTTCTTCTTGACGCACGGGATCGTCTCA 1374085 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCT--GTAGGTCGATTATATACGTATCGATGAGTA 17252 || || || | | | || ||| ||| || | || ||||| |||||||| | Sbjct 1374086 ATAGCGCGCAACAGGTGGTTCTTCTCCATCGTA--TCCTTGATGTACGTGTCGATGAGCA 1374143 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 | ||| | |||| ||| |||||||| ||||| ||||| || ||||| ||||| || | Sbjct 1374144 GCGAGTAGACCTCGGCGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCG 1374203 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCC 17370 | | | | || ||||| | ||| |||| || || || |||||||||||||| Sbjct 1374204 CCTTGGGCACCTGCACTTCGTTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCC 1374261 Query 17371 GTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 ||||||||| ||||| || |||| | ||||| ||||| Sbjct 1374262 GTCGCTCGCCGCGAAGAAGGCCAGCACGTGCTTGATGAA 1374300 >seq18 Length=670814 Score = 116 bits (128), Expect = 4e-21 Identities = 305/459 (66%), Gaps = 10/459 (2%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || || ||||| || || | ||||||| | |||||| || ||||| || | Sbjct 7969 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTTGCGGCTGATGAGCTCGTTGGAGA 7910 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| |||||||| || || ||||| | ||| || || | | ||| || || | Sbjct 7909 AGCTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCG 7850 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCG-CGTCT 17134 | ||||| || || || || | || ||||| | | || || | ||||| || | | Sbjct 7849 AGAAGAAGATGCCTTCAACCGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACCC 7790 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 | || | ||| || || |||| | || || | ||| | ||| ||||| || Sbjct 7789 GCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCCTTCTTCTTGACGCACGGGATCGTCTCA 7731 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCT--GTAGGTCGATTATATACGTATCGATGAGTA 17252 || || || | | | || ||| ||| || | || ||||| |||||||| | Sbjct 7730 ATAGCGCGCAACAGGTGGTTCTTCTCCATCGTA--TCCTTGATGTACGTGTCGATGAGCA 7673 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 | ||| | |||| ||| |||||||| ||||| ||||| || ||||| ||||| || | Sbjct 7672 GCGAGTAGACCTCGGCGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCG 7613 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCC 17370 | | | | || ||||| | ||| |||| || || || |||||||||||||| Sbjct 7612 CCTTGGGCACCTGCACTTCGTTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCC 7555 Query 17371 GTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 ||||||||| ||||| || |||| | ||||| ||||| Sbjct 7554 GTCGCTCGCCGCGAAGAAGGCCAGCACGTGCTTGATGAA 7516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545069515760