Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1 116 4e-21 seq5 107 2e-18 seq18 98.7 1e-15 >seq1 Length=13391543 Score = 116 bits (128), Expect = 4e-21 Identities = 305/458 (67%), Gaps = 8/458 (2%) Strand=Plus/Minus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || || |||||||| || | || || || | |||||| || ||||| || | Sbjct 5642153 ACATGAGGCAAGCGAAGTCCGTGTGCATGCCCTCATCGCGGCTGATCAGCTCGTTCGAGA 5642094 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||||| || || ||||| | |||||| || | |||| || || ||| Sbjct 5642093 AGCTCAGACCAGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAACGAGCCC 5642035 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CATC 16371 || ||||| || ||||| |||| || || || | | || |||| ||||| | || | Sbjct 5642034 GAGAAGAAGATGCCCTCCACAGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACC 5641975 Query 16372 TTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC 16431 || | ||| || | |||| | ||||| | || | ||| ||||| || Sbjct 5641974 CGCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTGACACACGGGATCGTCTC 5641916 Query 16432 TATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAA 16491 ||||| | || | || || ||| || | || ||||| || || || | Sbjct 5641915 GATGGCTCGCAGCAGGTGGTCCTTCTCCACCGCGTCCTTGATGTACGTGTCGATGAGCAG 5641856 Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGC 16551 ||||| || ||||| |||||||| ||||| ||||| || || |||||||| || || Sbjct 5641855 CGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGCGC 5641796 Query 16552 CTCCGCTATTTGTACTTCCACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACCG 16609 ||||| | || || || | || |||| ||||||||||| |||||||| ||| Sbjct 5641795 CTCCGGCACCTGCACCTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCCG 5641738 Query 16610 TCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 || || ||||| || || |||| | |||||| ||||| Sbjct 5641737 TCGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAA 5641700 Score = 116 bits (128), Expect = 4e-21 Identities = 305/458 (67%), Gaps = 8/458 (2%) Strand=Plus/Plus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || || |||||||| || | || || || | |||||| || ||||| || | Sbjct 5643807 ACATGAGGCAAGCGAAGTCCGTGTGCATGCCCTCATCGCGGCTGATCAGCTCGTTCGAGA 5643866 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||||| || || ||||| | |||||| || | |||| || || ||| Sbjct 5643867 AGCTCAGACCAGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAACGAGCCC 5643925 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CATC 16371 || ||||| || ||||| |||| || || || | | || |||| ||||| | || | Sbjct 5643926 GAGAAGAAGATGCCCTCCACAGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACC 5643985 Query 16372 TTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC 16431 || | ||| || | |||| | ||||| | || | ||| ||||| || Sbjct 5643986 CGCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTGACACACGGGATCGTCTC 5644044 Query 16432 TATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAA 16491 ||||| | || | || || ||| || | || ||||| || || || | Sbjct 5644045 GATGGCTCGCAGCAGGTGGTCCTTCTCCACCGCGTCCTTGATGTACGTGTCGATGAGCAG 5644104 Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGC 16551 ||||| || ||||| |||||||| ||||| ||||| || || |||||||| || || Sbjct 5644105 CGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGCGC 5644164 Query 16552 CTCCGCTATTTGTACTTCCACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACCG 16609 ||||| | || || || | || |||| ||||||||||| |||||||| ||| Sbjct 5644165 CTCCGGCACCTGCACCTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCCG 5644222 Query 16610 TCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 || || ||||| || || |||| | |||||| ||||| Sbjct 5644223 TCGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAA 5644260 >seq5 Length=6830280 Score = 107 bits (118), Expect = 2e-18 Identities = 303/458 (66%), Gaps = 8/458 (2%) Strand=Plus/Minus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || ||||||||||| || | || ||||| | |||||| || |||||||| | Sbjct 1397637 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGA 1397578 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||||| || || ||||| | |||||| || | |||| || || ||| Sbjct 1397577 AGCTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGGAGCCC 1397519 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CATC 16371 || ||||| || || ||||| | || || || | | || |||| ||||| | || | Sbjct 1397518 GAGAAGAAGATGCCTTCAACCGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACC 1397459 Query 16372 TTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC 16431 || | ||| || | |||| | || || | || | || ||||| || Sbjct 1397458 CGCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCCTTCTTCTTGACGCACGGGATCGTCTC 1397400 Query 16432 TATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAA 16491 || || |||| | | || ||| |||| | || ||||| || || || | Sbjct 1397399 AATAGCGCGCAACAGGTGGTTCTTCTCCATCGTATCCTTGATGTACGTGTCGATGAGCAG 1397340 Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGC 16551 ||| | || | ||| |||||||| ||||| ||||| || || |||||||| || || Sbjct 1397339 CGAGTAGACCTCGGCGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGC 1397280 Query 16552 CTCCGCTATTTGTACTTCCACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACCG 16609 ||| | | || ||||| | || |||| ||||||||||| |||||||| ||| Sbjct 1397279 CTCGGGCACCTGCACTTCGTTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCCG 1397222 Query 16610 TCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 || || || || || || |||| | |||||| ||||| Sbjct 1397221 TCGCTCGCCGCGAAGAAGGCCAGCACGTGCTTGATGAA 1397184 Score = 98.7 bits (108), Expect = 1e-15 Identities = 301/458 (66%), Gaps = 8/458 (2%) Strand=Plus/Plus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || ||||||||||| || | || |||| | |||||| || |||||||| | Sbjct 1373847 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTTGCGGCTGATGAGCTCGTTGGAGA 1373906 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||||| || || ||||| | |||||| || | |||| || || ||| Sbjct 1373907 AGCTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGGAGCCC 1373965 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CATC 16371 || ||||| || || ||||| | || || || | | || |||| ||||| | || | Sbjct 1373966 GAGAAGAAGATGCCTTCAACCGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACC 1374025 Query 16372 TTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC 16431 || | ||| || | |||| | || || | || | || ||||| || Sbjct 1374026 CGCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCCTTCTTCTTGACGCACGGGATCGTCTC 1374084 Query 16432 TATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAA 16491 || || |||| | | || ||| |||| | || ||||| || || || | Sbjct 1374085 AATAGCGCGCAACAGGTGGTTCTTCTCCATCGTATCCTTGATGTACGTGTCGATGAGCAG 1374144 Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGC 16551 ||| | || | ||| |||||||| ||||| ||||| || || |||||||| || || Sbjct 1374145 CGAGTAGACCTCGGCGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGC 1374204 Query 16552 CTCCGCTATTTGTACTTCCACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACCG 16609 || | | || ||||| | || |||| ||||||||||| |||||||| ||| Sbjct 1374205 CTTGGGCACCTGCACTTCGTTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCCG 1374262 Query 16610 TCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 || || || || || || |||| | |||||| ||||| Sbjct 1374263 TCGCTCGCCGCGAAGAAGGCCAGCACGTGCTTGATGAA 1374300 >seq18 Length=670814 Score = 98.7 bits (108), Expect = 1e-15 Identities = 301/458 (66%), Gaps = 8/458 (2%) Strand=Plus/Minus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || ||||||||||| || | || |||| | |||||| || |||||||| | Sbjct 7969 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTTGCGGCTGATGAGCTCGTTGGAGA 7910 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||||| || || ||||| | |||||| || | |||| || || ||| Sbjct 7909 AGCTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGGAGCCC 7851 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CATC 16371 || ||||| || || ||||| | || || || | | || |||| ||||| | || | Sbjct 7850 GAGAAGAAGATGCCTTCAACCGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACC 7791 Query 16372 TTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC 16431 || | ||| || | |||| | || || | || | || ||||| || Sbjct 7790 CGCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCCTTCTTCTTGACGCACGGGATCGTCTC 7732 Query 16432 TATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAA 16491 || || |||| | | || ||| |||| | || ||||| || || || | Sbjct 7731 AATAGCGCGCAACAGGTGGTTCTTCTCCATCGTATCCTTGATGTACGTGTCGATGAGCAG 7672 Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGC 16551 ||| | || | ||| |||||||| ||||| ||||| || || |||||||| || || Sbjct 7671 CGAGTAGACCTCGGCGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGC 7612 Query 16552 CTCCGCTATTTGTACTTCCACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACCG 16609 || | | || ||||| | || |||| ||||||||||| |||||||| ||| Sbjct 7611 CTTGGGCACCTGCACTTCGTTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCCG 7554 Query 16610 TCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 || || || || || || |||| | |||||| ||||| Sbjct 7553 TCGCTCGCCGCGAAGAAGGCCAGCACGTGCTTGATGAA 7516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511413875800240