Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq7 194 1e-44 seq2 138 1e-27 seq6 93.3 4e-14 >seq7 Length=4006126 Score = 194 bits (214), Expect = 1e-44 Identities = 537/817 (66%), Gaps = 20/817 (2%) Strand=Plus/Plus Query 132917 GCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGA 132976 ||||| || |||||||| || || || |||| ||| ||||| ||||| || ||| Sbjct 2438930 GCGCATGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCAT---CGA 2438986 Query 132977 CACCACCGAG-TAA--GTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTAT 133033 | | | | | | || || ||||||| | ||| ||||| || ||||| || Sbjct 2438987 CGTGAGCTTGCTGATGGTCGGGTCGGCGATGTGGATATTGAGCGACTGGCTCTGGCAAAT 2439046 Query 133034 GAAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGT 133093 | | | | |||||||| | || || | | ||| |||||||||||| |||| Sbjct 2439047 GTAGGCGCCGCGGTCGGCCGACAGGTCCAGCACGGCCTTCTGTTTGATCTCCCACACCGT 2439106 Query 133094 CTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTC 133153 |||| | | |||||| || | || || | | | ||||||||||| ||| || Sbjct 2439107 CTTGTACTTCTCCTTGACGTGGTCCGGGATGGCCTTGACCTTCTGCACGGAGCCGCCGTC 2439166 Query 133154 GGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGAC 133213 | || |||| |||||||| || || || | ||| | || ||||| ||| | || | Sbjct 2439167 GTTCAGGATCTGGTTGCGCACGTCGGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCAT 2439226 Query 133214 GAGATACTGGTTGACCA-CTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCG 133272 || |||| |||||| | | || ||||||||||| || ||||| | | || | || | Sbjct 2439227 CAGGTACTTGTTGACGATCGTG-AACTCGCCGGCCAGCACGCGGCGGTTGTACATGTTGG 2439285 Query 133273 ACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCA 133332 ||||| |||| |||| || |||||||||||||| ||||| ||||||| || ||||||| Sbjct 2439286 ACGTGTACGGCTCGATGGACTCGTTGTTGCCGAGGATCTGGGCCGTCGAGGCAGTGGGCA 2439345 Query 133333 TGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGT 133392 || ||||||| || ||||| | | ||||| |||| | | ||| || || | Sbjct 2439346 TGGGGGCCACCAGCAGCGAGTTGCGCAGGCCGTGCTTGATCACGTTCTCCTTCAGCGCCG 2439405 Query 133393 TCCAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAAT 133452 ||||| |||||| || || |||| || | || | | ||| || | Sbjct 2439406 CCCAGTTCCACAG---GTCCGA-----CGACGGGGT----GACGCCCCACATGTCGAACT 2439453 Query 133453 GCAAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGG 133512 | || || ||| |||| |||| | || | ||| || || || ||| |||| Sbjct 2439454 GGAAGATGCCCTTGCTGGCCGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGCTCCTTGG 2439513 Query 133513 CCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGA 133572 | | ||| | | ||||| || ||| |||| ||||| || ||| | ||||| Sbjct 2439514 CGATCTCCATGGACGTCTCCATGGCTGCATAGTAGATGGTCTCGAAGATCTTCTTGTTGA 2439573 Query 133573 CGAACCTGGCATCGTCGCTATCGTAGGCGATGTCGAGAAGAACAAACGCGTCGGCCAAAC 133632 | ||| || ||||| ||| | |||| || | || | |||||||| || | | Sbjct 2439574 GCTCGCGGGCCTCCTCGCTCTCGAACGCGAAGTTCATGAGGATGAACGCGTCCGCGAGGC 2439633 Query 133633 CCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGG 133692 |||| | ||||| ||||||||| || || | ||| | | || ||||||| || Sbjct 2439634 CCTGGACGCCGATGCCGATGGGGCGGTGACGCATGTTGGACTTGCGCGCCTCGGCCACGG 2439693 Query 133693 GATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCG 133729 | |||| |||||||||||||| |||||| || ||||| Sbjct 2439694 GGTAGTAGTTGACGTCGATGACCTTGTTCAGGTTGCG 2439730 >seq2 Length=11587142 Score = 138 bits (152), Expect = 1e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||||| || ||||| || || |||||||| ||||||| ||||| || Sbjct 3716479 CAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 3716420 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| || || ||| |||| ||||||||||| || || || |||||||||||||| Sbjct 3716419 CTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 3716360 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || ||||| || || | |||| | ||||| ||| || || | || | ||| Sbjct 3716359 CTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGT 3716300 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || || || ||||||||| Sbjct 3716299 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 3716266 Score = 138 bits (152), Expect = 1e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| ||||||| ||||| ||||| Sbjct 3716704 CACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 3716645 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| |||| ||||||||||| || || || |||||||||||||| Sbjct 3716644 GAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 3716585 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||||| || || | |||| | ||||| ||| || || | || | ||| || Sbjct 3716584 GATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTT 3716525 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| ||||| || || || || ||||||||| Sbjct 3716524 GCCAGTCAGGGTCTTCACGAAGATCTGCATG 3716494 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||||| || ||||| || || |||||||| ||||||| ||||| || Sbjct 3716251 CAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 3716192 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| || || ||| |||| ||||||||||| || || || |||||||||||||| Sbjct 3716191 CTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 3716132 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || ||||| || || | |||| | ||||| ||| || || | || | ||| Sbjct 3716131 CTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGT 3716072 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || || || |||||||| Sbjct 3716071 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3716039 >seq6 Length=4785000 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || | ||||| ||||||||||| || || ||| |||| Sbjct 2506671 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 2506730 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || || || |||||||||||||| ||||| || || || | || Sbjct 2506731 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 2506790 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 2506791 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 2506850 Query 118731 ATCTGCATG 118739 ||||||||| Sbjct 2506851 ATCTGCATG 2506859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829966440744