Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq2 208 7e-49 >seq2 Length=11587142 Score = 208 bits (230), Expect = 7e-49 Identities = 413/607 (68%), Gaps = 36/607 (6%) Strand=Plus/Plus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 || || || |||||||| || |||||||| || || | ||| ||||| || || Sbjct 8407818 AGCGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACGTGGACAAACTCACCA 8407877 Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044 || ||| ||||| || || || | ||| |||||| | |||||||||||||| || Sbjct 8407878 GGCTTCAACCCCGTCACCTGCGCCACCAGTCGCGTCAGCAACGCGTAGCTGGCGATATTG 8407937 Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC 21104 ||||| || || || ||||||||||| || | |||||||| ||| ||||||| ||| || Sbjct 8407938 AACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGACAGGACAACTCGCCG 8407997 Query 21105 CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCC 21164 ||||||||| ||||| || || | ||| || || ||||| ||||| ||| ||| Sbjct 8407998 TCAGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCATTTCGTTGAGATCC 8408057 Query 21165 GCGGGGTTCCACGCGCACATAACGATGCGCCGATC-GTGGG--------GCCGCCTGTTA 21215 || ||||||||||| ||| ||||| || || || || || || || ||| | Sbjct 8408058 GCCGGGTTCCACGCCGACAGCACGATCCGTCGGTCGGTCGGGTTCGTGCGCAGCTTGTGA 8408117 Query 21216 ATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCC 21275 || | || || || ||||||||||| ||||| | ||||| ||| | Sbjct 8408118 AT---AACCTCCGCG------AGCTGGTCCACGCCCTGGTTCGTGTAGTCGGCATGCATG 8408168 Query 21276 CCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC- 21334 || |||||| |||||||| || | ||||||||| ||||| ||||| || |||||||| Sbjct 8408169 TCCGTGTACTTGGCCCCAAAGTGCCGCCACTGGAAGCCGTAGACCGGTCCGAGATCGCCC 8408228 Query 21335 ----CTCGCG---GCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCG 21387 |||||| || |||| ||| ||| ||| | | | || || || | Sbjct 8408229 ACTTCTCGCGATTGCAGTCCACGA----CTG----TCCAGATACTCCCGCGATCCATTGC 8408280 Query 21388 CGTCCCAAATTTTTACGCCGCGGCGCGACAG-TTCGGTGGAGTCGGTGGAGCCCCTGATA 21446 ||||||| || | | | | || ||| | | | | || ||| || ||||| Sbjct 8408281 CGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTC-GTGTCTCCACTGATG 8408339 Query 21447 AACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGA 21506 |||||||||| ||||||| | ||||| | ||| ||||| | ||||| || | ||| || Sbjct 8408340 AACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGTGGG 8408399 Query 21507 AACTCGT 21513 ||| ||| Sbjct 8408400 AACACGT 8408406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427775572491360