Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq18 87.8 2e-12 seq5 87.8 2e-12 seq1 87.8 2e-12 >seq18 Length=670814 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 52894 GGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATG 52953 ||||||||| |||| | |||||| ||||||||||||| || || ||| | ||| || Sbjct 8080 GGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTAC 8139 Query 52954 CAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATA 53013 ||| || ||| || ||| || | |||||||| | ||| ||| || Sbjct 8140 TCGCTGGGCGTGCCCAAGCTCTACAACGTCAAGAACCCCTTCGACTGGATGGACATGATC 8199 Query 53014 TCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 ||||| ||||||| || ||||| ||||||| ||||||||||||||| Sbjct 8200 TCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTAC 8247 >seq5 Length=6830280 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 52894 GGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATG 52953 ||||||||| |||| | |||||| ||||||||||||| || || ||| | ||| || Sbjct 1373736 GGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTAC 1373677 Query 52954 CAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATA 53013 ||| || ||| || ||| || | |||||||| | ||| ||| || Sbjct 1373676 TCGCTGGGCGTGCCCAAGCTCTACAACGTCAAGAACCCCTTCGACTGGATGGACATGATC 1373617 Query 53014 TCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 ||||| ||||||| || ||||| ||||||| ||||||||||||||| Sbjct 1373616 TCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTAC 1373569 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 52894 GGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATG 52953 ||||||||| |||| | |||||| ||||||||||||| || || ||| | ||| || Sbjct 1397748 GGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTAC 1397807 Query 52954 CAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATA 53013 ||| || ||| || ||| || | |||||||| | ||| ||| || Sbjct 1397808 TCGCTGGGCGTGCCCAAGCTCTACAACGTCAAGAACCCCTTCGACTGGATGGACATGATC 1397867 Query 53014 TCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 ||||| ||||||| || ||||| ||||||| ||||||||||||||| Sbjct 1397868 TCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTAC 1397915 >seq1 Length=13391543 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 52894 GGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATG 52953 ||||||||| || | |||||||| ||||||| ||||| || || ||| | ||| || Sbjct 5642264 GGCATGAACTCGTCGCTGATGTGCCAGTACATTGAGTTCGTGGCCGACCGCCTGCTGTAC 5642323 Query 52954 CAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATA 53013 ||| || | |||| ||| || ||| ||||| || | ||| ||| || Sbjct 5642324 TCGCTGGGCGTGTCGAAGATCTACAACGCGAAGAACCCGTTCGACTGGATGGACATGATC 5642383 Query 53014 TCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 ||||| ||||||| || ||||| ||||||| ||||||||||||||| Sbjct 5642384 TCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTAC 5642431 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 52894 GGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATG 52953 ||||||||| || | |||||||| ||||||| ||||| || || ||| | ||| || Sbjct 5643696 GGCATGAACTCGTCGCTGATGTGCCAGTACATTGAGTTCGTGGCCGACCGCCTGCTGTAC 5643637 Query 52954 CAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATA 53013 ||| || | |||| ||| || ||| ||||| || | ||| ||| || Sbjct 5643636 TCGCTGGGCGTGTCGAAGATCTACAACGCGAAGAACCCGTTCGACTGGATGGACATGATC 5643577 Query 53014 TCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 ||||| ||||||| || ||||| ||||||| ||||||||||||||| Sbjct 5643576 TCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTAC 5643529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063491534400