Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq2 131 1e-25 >seq2 Length=11587142 Score = 131 bits (144), Expect = 1e-25 Identities = 370/564 (66%), Gaps = 21/564 (4%) Strand=Plus/Plus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| ||||| || ||||| | ||| || ||||| || || || | | |||| Sbjct 8407806 AGCTGCTTCTGGAGCGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACGTGG 8407865 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAG 25532 |||||||| || || | | ||| || || | |||| || ||| || | |||| Sbjct 8407866 ACAAACTCACCAGGCTTCAACCCCGTCACCTGCGCCACCAGTCGCGTCAGCAACGCGTAG 8407925 Query 25533 CTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACA 25592 |||||||| || || || || || | ||||||| | |||| | |||||| | |||||| Sbjct 8407926 CTGGCGATATTGAACGGCACGCCAAGTCCCATGT-CGGCCGAGCGCTGGTACATCTGACA 8407984 Query 25593 CGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 || | ||| |||| |||||| ||||| || | ||| |||||| || || || || Sbjct 8407985 GGACAACTCGCCGTCAGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT 8408044 Query 25653 AAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTC-TTCTGGGTTGT 25711 | | || |||||||| || ||| | ||| | | ||| || || | || Sbjct 8408045 TTCGTTGAGATCCGCCGGGTTCCACGCCGACAGCACGATCCGTCGGTCGGTCGGGTTCGT 8408104 Query 25712 CC----CT----GATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 25763 | || |||| |||||| ||||| ||||| ||| || ||| Sbjct 8408105 GCGCAGCTTGTGAATAACCTCCGCG---------AGCTGGTCCACGCCCTGGTTCGTGTA 8408155 Query 25764 GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGG 25823 ||| || |||||||||||||| || || || | || ||||||||| ||||| ||||| Sbjct 8408156 GTCGGCATGCATGTCCGTGTACTTGGCCCCAAAGTGCCGCCACTGGAAGCCGTAGACCGG 8408215 Query 25824 TCCTAGGTCTCCATCTTCCCTGTGCTCAAAG-CCCCTCTTATCCAAAAAGTCTCTGGAAC 25882 ||| || || || |||| | | | | || || | | |||| | | || | || | Sbjct 8408216 TCCGAGATCGCCCACTTCTC-GCGATTGCAGTCCACGACTGTCCAGATACTCCCGCGATC 8408274 Query 25883 CATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTC 25942 ||||| |||||||||| | | |||||| ||| | | | ||| || | Sbjct 8408275 CATTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCTCCAC 8408334 Query 25943 TGACGAACCACAGCAGCTCCGCCG 25966 ||| |||||||||||||||| ||| Sbjct 8408335 TGATGAACCACAGCAGCTCCTCCG 8408358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340137260074986