Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2 140 5e-29 seq1 136 6e-28 >seq2 Length=11587142 Score = 140 bits (154), Expect = 5e-29 Identities = 179/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 2730397 CGCTAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 2730339 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || || ||||| || || |||||| |||| || | |||| || |||| Sbjct 2730338 TCCGCCGTCTCGCACGCCGTGGCGGTGTGAAGCGTATCTCCGGCCTAATCTACGAGGAGA 2730279 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | |||||| ||| ||| |||| || | || ||| || | Sbjct 2730278 CCCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACCTACACGG 2730219 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || || || || ||||||| |||| || || | || ||||| | Sbjct 2730218 AGCACGCTCGCCGAAAAACCGTGACGGCCATGGACGTCGTGTACGCCCTCAAGCGTCAGG 2730159 Query 16671 GCCG 16674 |||| Sbjct 2730158 GCCG 2730155 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| || || Sbjct 9236293 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 9236234 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| ||||||||||| ||||| |||| || | |||| || |||| Sbjct 9236233 CCGCCGTCTCGCTCGCCGTGGTGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 9236174 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || | || || || || Sbjct 9236173 GCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACTCGGTCACGTACACGGA 9236114 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| || || ||||||| |||| || || | || || || || Sbjct 9236113 GCACGCGCGCCGCAAGACCGTGACGGCCATGGACGTCGTGTACGCGCTCAAGCGCCAGGG 9236054 Query 16672 CCG 16674 || Sbjct 9236053 ACG 9236051 >seq1 Length=13391543 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| || || Sbjct 6287664 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 6287723 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| || || |||||||| || |||||| |||| || | |||| || |||| Sbjct 6287724 CCGCCGTCTCGCACGCCGTGGTGGTGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 6287783 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | |||||| ||| ||| |||| || | || ||| || || Sbjct 6287784 CCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACCTACACGGA 6287843 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || || || ||||||| |||| || || | || || || || Sbjct 6287844 GCACGCTCGCCGCAAAACCGTGACGGCCATGGACGTCGTGTACGCCCTCAAGCGCCAGGG 6287903 Query 16672 CCG 16674 ||| Sbjct 6287904 CCG 6287906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075125026826