Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq7 320 4e-82 >seq7 Length=4006126 Score = 320 bits (354), Expect = 4e-82 Identities = 883/1347 (66%), Gaps = 11/1347 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||||||||| || || ||| ||| || || || || | ||||| |||| || Sbjct 2440558 TTCACGCACGCGACCCCGACACTGTTTAACGCCGGCACGCCGCGCCCACAACTGTCGTCC 2440499 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | ||| ||||||| ||||| ||||| |||| ||||| || ||| | Sbjct 2440498 TGCTTCCTGTTGGCCATGCAGGACGACTCCATTGAGGGCATCTACGACACGCTCAAGCAG 2440439 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || || ||| || || || || || | || ||||| | || || Sbjct 2440438 TGCGCGTGCATCTCTAAGTGGGCCGGAGGTATCGGCATCAGCATGCACAACATCCGCGCC 2440379 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||| || ||||| || ||||| || | || ||||| | | |||||||| || Sbjct 2440378 ACGAATAGCTACATCCGTGGCACGAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGC 2440319 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 ||||| || | || || | ||||| |||||||| ||||| |||||||| || |||| Sbjct 2440318 GTGTTCAACGACACGGCCCGCTACGTGGACCAGGGCGGAGGCAAGCGCAAGGGCTCGTTC 2440259 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || || || ||||| || || || | || ||||| || || || || || ||| Sbjct 2440258 GCCATCTACCTTGAGCCCTGGCACGCGGACGTGTTCGAGTTCCTGGACCTGCGCAAGAAC 2440199 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| || || || || |||||||| || || ||||| | || | Sbjct 2440198 CACGGCAACGAGCTGCACCGCGCGCGCGACCTGTTCTACGCGCTGTGGGTGCCCGATCTG 2440139 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || |||||| | |||||||| | || ||| || || ||||| | ||| ||| Sbjct 2440138 TTCATGAAGAGGGTGGAGGCCAATGGCAAGTGGAGTCTGTTCTGCCCCAATGAAGCTCCT 2440079 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 || || | ||| ||||| || || | || | || || |||||||| || |||| Sbjct 2440078 GGGCTCTACGAGTGCTGGGGCGAGGAGTTTGAGACCCTTTATGAAAAGTACGAGAAGGAG 2440019 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 ||| || || ||||| || ||| ||| |||| ||||| |||||| |||| ||||| Sbjct 2440018 GGACGCGCGCGCAAGACGATCAACGCGCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAG 2439959 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 || ||||| || |||| ||| | ||||| || || |||||| ||||| |||||| Sbjct 2439958 ATCGAGACGGGCGTGCCCTTCATGCTCTACAAGGACGCGGCCAACCGGAAGTCGAACCAG 2439899 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 ||| |||| ||||| || | |||||| | || |||| | || || ||||| | Sbjct 2439898 CAGAACCTCGGTACGATCCGCTCCAGCAACTTGTGCTGCGAGGTGATGGAGTACACGTCC 2439839 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGAT 364326 ||||||||| ||||| || ||||| || ||| | ||||| || |||||| | || Sbjct 2439838 CCCGACGAGGTGGCCGTGTGCAACCTGGCCTCGGTGGCGCTGCCCAAGTTTGTGGAGGAG 2439779 Query 364327 GGTACTTTTGACCACCAGCATCTTTATGACGTAACCTA--TCATGCTACTTGCAATCTCG 364384 || || ||| ||||| | || || || || ||| | |||| || |||| || Sbjct 2439778 GGCGTGTTCGACTACCAGAAGCTCTACGAGGTCACCAAGGTCAT--CACGCGCAACCTGA 2439721 Query 364385 ACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCGT 364443 ||||||| |||||| || || || || | | | || || || || || |||||| Sbjct 2439720 ACAAGGTCATCGACGTCAACTACTACCCCGTGGCCG-AGGCGCGCAAGTCCAACATGCGT 2439662 Query 364444 CATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATG 364503 || ||||| || || | || || ||||||||||| |||| || || | | || | Sbjct 2439661 CACCGCCCCATCGGCATCGGCGTCCAGGGCCTCGCGGACGCGTTCATCCTCATGAACTTC 2439602 Query 364504 GCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTT 364563 || || || || || || | || || ||| ||||||| || || || || | | Sbjct 2439601 GCGTTCGAGAGCGAGGAGGCCCGCGAGCTCAACAAGAAGATCTTCGAGACCATCTACTAT 2439542 Query 364564 GCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAG 364623 || || ||| | || || | || || || |||| || | || Sbjct 2439541 GCAGCCATGGAGACGTCCATGGAGATCGCCAAGGAGCTCGGCCCGTACGAGACGTTCCAG 2439482 Query 364624 GGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTC 364683 || || || |||| | |||||||| || | ||| ||||| || || ||| Sbjct 2439481 GGCTCGCCGGCCAGCAAGGGCATCTTCCAGTTCGACATGTGGGGCGTCACCCCGTC-GTC 2439423 Query 364684 CGA----TGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTC 364739 || |||||||||| |||| ||||| | ||||| || |||||||| Sbjct 2439422 GGACCTGTGGAACTGGGCGGCGCTGAAGGAGAACGTGATCAAGCACGGCCTGCGCAACTC 2439363 Query 364740 CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTG 364799 || | || ||||||||||| || || || || ||||||||||| |||||||||| Sbjct 2439362 GCTGCTGGTGGCCCCCATGCCCACTGCCTCGACGGCCCAGATCCTCGGCAACAACGAGTC 2439303 Query 364800 CTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGT 364859 | |||| |||| || ||| | || ||||| || || |||| || || || | Sbjct 2439302 CATCGAGCCGTACACGTCCAACATGTACAACCGCCGCGTGCTGGCCGGCGAGTTCACGAT 2439243 Query 364860 AGTTAATAAGTACCTAGTCAAGGATCT 364886 || || |||||||| | ||||| || Sbjct 2439242 CGTCAACAAGTACCTGATGAAGGAGCT 2439216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352230664124