Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq2 174 1e-38 >seq2 Length=11587142 Score = 174 bits (192), Expect = 1e-38 Identities = 466/701 (66%), Gaps = 25/701 (4%) Strand=Plus/Plus Query 20134 CGGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTG-T 20192 ||| || || || || | ||||| |||||| | | || ||||| | || ||| | | Sbjct 8407781 CGGGAATGGGCGCGGCATTCGCGTAAGCTGCTTCTGGAGCGGCTCGACGTG-GTTCAGAT 8407839 Query 20193 AGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAG 20252 | | ||||||||| || | ||| | |||||| || || | | || || || || | Sbjct 8407840 ACACGTGGGCATCGCCAATAACGTGGACAAACTCACCAGGCTTCAACCCCGTCACCTGCG 8407899 Query 20253 CAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGT 20312 | | || || | | | |||||||| || || || || || || | ||||||| Sbjct 8407900 CCACCAGTCGCGTCAGCAACGCGTAGCTGGCGATATTGAACGGCACGCCAAGTCCCATGT 8407959 Query 20313 CTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATA 20372 | |||| | ||| |||| ||||||||| | ||| |||||||| || || || || || | Sbjct 8407960 CGGCCGAGCGCTGGTACATCTGACAGGACAACTCGCCGTCAGCCACGTAGAACTGGCAGA 8408019 Query 20373 ACAAGTGACAGGGCGGAAGCGCCATCAACGACAAG-TCCGCCGGGTTCCACGCACACATA 20431 ||| ||| || ||||| |||||||| || || ||||||||||||||||| ||| Sbjct 8408020 ACATGTGGCACGGCGGGAGCGCCATTT-CGTTGAGATCCGCCGGGTTCCACGCCGACAGC 8408078 Query 20432 ATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCA 20491 | ||| | || ||| ||| || | | | | || | || | ||||| Sbjct 8408079 ACGATCCGTCGGTCGGTCGGGTTCGTGCGCAGCTTGTGAATAACCTCCGCGAGCTGGTCC 8408138 Query 20492 AACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCAC 20551 | |||||| || ||||| |||| | |||| |||| ||||||||||||| |||| Sbjct 8408139 ACGCCCTGGTTCGTGTAGTCGGCATGCATGTCCGTGTACTTGGCCCCAAAGTGCCGCCAC 8408198 Query 20552 TGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCG---CCAGGCCGCGCCCG 20608 ||||| ||||| || ||||| | ||| || | ||||| ||| ||| || || | | Sbjct 8408199 TGGAAGCCGTAGACCGGTCCGAGATCGCC--CACTTCT-CGCGATTGCAGTCCACGACTG 8408255 Query 20609 GCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTTGAAAGCTCC 20668 |||| |||||| || ||||| |||||| || | || ||| ||| ||| | Sbjct 8408256 TCCAGATACTCCCGCGATCCATTGCCGTCCCAGATGTGGA----TGTCCTT--CTGCTGC 8408309 Query 20669 CTGGAGTCAGTACTC------CCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGC 20722 | || | |||| || | | ||||| |||||||| | | | ||||| ||| Sbjct 8408310 AGCGTGTGCGCACTCGTGTCTCCACTGATGAACCACAGCAGCTCCTCCGCCACGCCGCGC 8408369 Query 20723 CAAAACACCCGCTTTGTGGTTAGTA-AGGGA--AAGTGGTCCCGCAGACTATACCTGGCC 20779 || ||||| ||||| || || || | |||| | || ||||| |||||| ||| | Sbjct 8408370 CAGAACACGCGCTTGGTCGTGAGCAGTGGGAACACGTTGTCCCTCAGACTGAACCGCATC 8408429 Query 20780 TGCATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTC 20820 ||| |||||| | || || |||||| | || || ||||| Sbjct 8408430 TGCGCGCCAAAGACCGACAGCGTGCCTGTTCCCGTCCGGTC 8408470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441372347592880