Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq5 131 4e-25 seq18 125 2e-23 seq1 118 2e-21 >seq5 Length=6830280 Score = 131 bits (144), Expect = 4e-25 Identities = 281/412 (68%), Gaps = 10/412 (2%) Strand=Plus/Plus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 |||||||| || | || || || |||||| ||||||| ||||| ||| || Sbjct 1397499 GTTGAAGGCATCTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGC 1397558 Query 243379 GTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAA 243438 | ||||| ||||| | | || |||||| ||||||| |||||||||||| | ||| Sbjct 1397559 CTCATGCCCGGCCTGAGCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGCATGCACACG 1397618 Query 243439 CAGTTCG-GTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAA--CG-GT 243494 | |||| ||| || ||||| || ||||| ||||| || || ||| | || || Sbjct 1397619 GACTTCGCGTGC-CTCATGTACTCCAAGCTGGTCAACAAACTGCC---CGAGAGCCGCGT 1397674 Query 243495 CAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCC 243554 | ||||| | || || || | ||| | || ||| | |||||| | | || Sbjct 1397675 GCACGAAATCGTTCGTGAGGCCGTCACCATCGAGCACGAGTTCGTGTGCGACTCGCTGCC 1397734 Query 243555 ATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGA 243614 ||| || ||||||||||| |||||| | ||||||||||| ||||| ||||| Sbjct 1397735 CGTGGAGCTCATCGGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTTCGTGGCCGA 1397794 Query 243615 CCGCATTTTCATCGCGCTTGGTTATGAGAAAG-TGTACAACTCCAAGAACCCCTTTGCCT 243673 |||| | | | |||| || || ||| | |||||| |||||||||||| | || Sbjct 1397795 CCGCCTGCTGTACTCGCTGGGCG-TGCCCAAGCTCTACAACGTCAAGAACCCCTTCGACT 1397853 Query 243674 TTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||||| | || ||||| || || || || ||||||||||| |||||||| Sbjct 1397854 GGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGT 1397905 Score = 125 bits (138), Expect = 2e-23 Identities = 280/412 (68%), Gaps = 10/412 (2%) Strand=Plus/Minus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 |||||||| || | || || || |||||| ||||||| ||||| ||| || Sbjct 1373985 GTTGAAGGCATCTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGC 1373926 Query 243379 GTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAA 243438 | ||||| ||||| | | || |||||| ||||||| ||| |||||||| | ||| Sbjct 1373925 CTCATGCCCGGCCTGAGCTTCTCCAACGAGCTCATCAGCCGCAACGAGGGCATGCACACG 1373866 Query 243439 CAGTTCG-GTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAA--CG-GT 243494 | |||| ||| || ||||| || ||||| ||||| || || ||| | || || Sbjct 1373865 GACTTCGCGTGC-CTCATGTACTCCAAGCTGGTCAACAAACTGCC---CGAGAGCCGCGT 1373810 Query 243495 CAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCC 243554 | ||||| | || || || | ||| | || ||| | |||||| | | || Sbjct 1373809 GCACGAAATCGTTCGTGAGGCCGTCACCATCGAGCACGAGTTCGTGTGCGACTCGCTGCC 1373750 Query 243555 ATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGA 243614 ||| || ||||||||||| |||||| | ||||||||||| ||||| ||||| Sbjct 1373749 CGTGGAGCTCATCGGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTTCGTGGCCGA 1373690 Query 243615 CCGCATTTTCATCGCGCTTGGTTATGAGAAAG-TGTACAACTCCAAGAACCCCTTTGCCT 243673 |||| | | | |||| || || ||| | |||||| |||||||||||| | || Sbjct 1373689 CCGCCTGCTGTACTCGCTGGGCG-TGCCCAAGCTCTACAACGTCAAGAACCCCTTCGACT 1373631 Query 243674 TTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||||| | || ||||| || || || || ||||||||||| |||||||| Sbjct 1373630 GGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGT 1373579 >seq18 Length=670814 Score = 125 bits (138), Expect = 2e-23 Identities = 280/412 (68%), Gaps = 10/412 (2%) Strand=Plus/Plus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 |||||||| || | || || || |||||| ||||||| ||||| ||| || Sbjct 7831 GTTGAAGGCATCTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGC 7890 Query 243379 GTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAA 243438 | ||||| ||||| | | || |||||| ||||||| ||| |||||||| | ||| Sbjct 7891 CTCATGCCCGGCCTGAGCTTCTCCAACGAGCTCATCAGCCGCAACGAGGGCATGCACACG 7950 Query 243439 CAGTTCG-GTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAA--CG-GT 243494 | |||| ||| || ||||| || ||||| ||||| || || ||| | || || Sbjct 7951 GACTTCGCGTGC-CTCATGTACTCCAAGCTGGTCAACAAACTGCC---CGAGAGCCGCGT 8006 Query 243495 CAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCC 243554 | ||||| | || || || | ||| | || ||| | |||||| | | || Sbjct 8007 GCACGAAATCGTTCGTGAGGCCGTCACCATCGAGCACGAGTTCGTGTGCGACTCGCTGCC 8066 Query 243555 ATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGA 243614 ||| || ||||||||||| |||||| | ||||||||||| ||||| ||||| Sbjct 8067 CGTGGAGCTCATCGGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTTCGTGGCCGA 8126 Query 243615 CCGCATTTTCATCGCGCTTGGTTATGAGAAAG-TGTACAACTCCAAGAACCCCTTTGCCT 243673 |||| | | | |||| || || ||| | |||||| |||||||||||| | || Sbjct 8127 CCGCCTGCTGTACTCGCTGGGCG-TGCCCAAGCTCTACAACGTCAAGAACCCCTTCGACT 8185 Query 243674 TTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||||| | || ||||| || || || || ||||||||||| |||||||| Sbjct 8186 GGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGT 8237 >seq1 Length=13391543 Score = 118 bits (130), Expect = 2e-21 Identities = 448/692 (65%), Gaps = 31/692 (4%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| |||||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 6652976 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAG 6653035 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||| ||||||||||| || ||||| |||||||| || | |||||| || || Sbjct 6653036 GTGCGACTCAATGTGGTGGAATGCGTGCTGGGCCACGTAGGCGAAACGCATGGCAGGGTG 6653095 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || ||| |||| | |||| | ||||| |||| ||| || || || Sbjct 6653096 CTTCCACACCTGGCCGCTGGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGA 6653155 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTG-------GAGTTCAGCGATACCT 333546 || || ||||| || || | ||| | || | | ||| || || ||| Sbjct 6653156 CTTACCGGCACCGTTGGGTCCCAGCACGGCGATACGGCTCGACAGAGCGCA-CGTCACCG 6653214 Query 333547 GGGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCG 333605 | || |||| || | | | || | ||| || |||||| || || Sbjct 6653215 AGATGTT---GTTGATCGACG----GCTTCGAGGCACCAGGGTACTTGTACGAG-CAGTT 6653266 Query 333606 CGT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG 333664 || || ||||||| |||| |||| | | ||||| || ||||| || Sbjct 6653267 GGTCAGACGAATGATGGGCTTACCCTTGTTCTTGATGTCGGCAAGGAAACCAGGCTCCGG 6653326 Query 333665 GAACTTCCACGTGG---TCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACG 333721 ||| | || || ||| || |||| || ||||||| | | ||||| Sbjct 6653327 GAAGATGAACTTGACGTTCTCCGACTCG---AGCTCGTAGTAGGCCTTGGCCTCGGGCTT 6653383 Query 333722 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 333781 || || |||||||| |||||| || |||||||| |||||||||| || | ||||| Sbjct 6653384 CTGCTCCACGAACTTGGACAGGTTGCCCTTGTAGATCTTCAGCTTACGGGTC---TCGTA 6653440 Query 333782 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 333841 ||||| || || || || ||||||||| ||||||||||| ||||| || | | | Sbjct 6653441 GTGGATGATGTTAGTACACACGTTGTCGAGGAAGCCGGAGTCGTGGGACACCATGATGGA 6653500 Query 333842 CGAAACGTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACAGAA 333899 | |||| | | | ||||||| ||| || ||||| ||||| ||| Sbjct 6653501 GGTGACGTTGGGCACGCTCGTCAGGTAGTTC--TCGAGCCAAGCGACGTTCTTGACATCC 6653558 Query 333900 AGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCA 333959 | ||||| || ||||| ||||| || || | | || ||||| ||||| ||||| | Sbjct 6653559 AAGTGGTTCGTGGGCTCATCAAGCAGCAGAATGTCGGCCTTCAGCAGCATGGCACGCGAC 6653618 Query 333960 AGAGCGAGTTTCATTTTCCACCCTCCTGAAAG 333991 || |||||||||| ||||| || || || || Sbjct 6653619 AGCTCGAGTTTCATCTTCCAACCACCGGACAG 6653650 Score = 111 bits (122), Expect = 3e-19 Identities = 257/382 (67%), Gaps = 4/382 (1%) Strand=Plus/Plus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||| ||||||| ||||| ||| || |||||||||| || | | || ||| Sbjct 5642042 TTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCTGGTCTGAGCTTCTCGAAC 5642101 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 ||| | ||||| ||||| |||||| | ||| | |||| | || ||||| || ||| Sbjct 5642102 GAGCTGATCAGCCGCGATGAGGGCATGCACACGGACTTCGCTTGCCTCATGTACTCCAAG 5642161 Query 243466 CTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 || ||||||||| || || || || | | ||| | || || || | Sbjct 5642162 CTGGTGAACAAGCTGCCGGA-GAGCCGCGTGCACGAGATCGTGCGCGATGCCGTGACCAT 5642220 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCG-GCTTATTGGCATGAACTCTGAAC 243583 ||| | || ||| | ||||| | | || || | ||| || ||||||||||| | Sbjct 5642221 CGAGCACGAGTTCGTGCGCGACTCGCTGCC-TGTGGAGCTGATCGGCATGAACTCGTCGC 5642279 Query 243584 TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643 | ||| | |||||||| || ||||| ||||||||| | | | |||| || || Sbjct 5642280 TGATGTGCCAGTACATTGAGTTCGTGGCCGACCGCCTGCTGTACTCGCTGGGCGTGTCGA 5642339 Query 243644 AAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 | | |||||| | |||||||| || | || ||||| | || ||||| || || || | Sbjct 5642340 AGATCTACAACGCGAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGA 5642399 Query 243704 CTAACTTCTTCGAAAAGCGTGT 243725 | ||||||||||| |||||||| Sbjct 5642400 CCAACTTCTTCGAGAAGCGTGT 5642421 Score = 111 bits (122), Expect = 3e-19 Identities = 257/382 (67%), Gaps = 4/382 (1%) Strand=Plus/Minus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||| ||||||| ||||| ||| || |||||||||| || | | || ||| Sbjct 5643918 TTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCTGGTCTGAGCTTCTCGAAC 5643859 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 ||| | ||||| ||||| |||||| | ||| | |||| | || ||||| || ||| Sbjct 5643858 GAGCTGATCAGCCGCGATGAGGGCATGCACACGGACTTCGCTTGCCTCATGTACTCCAAG 5643799 Query 243466 CTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 || ||||||||| || || || || | | ||| | || || || | Sbjct 5643798 CTGGTGAACAAGCTGCCGGA-GAGCCGCGTGCACGAGATCGTGCGCGATGCCGTGACCAT 5643740 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCG-GCTTATTGGCATGAACTCTGAAC 243583 ||| | || ||| | ||||| | | || || | ||| || ||||||||||| | Sbjct 5643739 CGAGCACGAGTTCGTGCGCGACTCGCTGCC-TGTGGAGCTGATCGGCATGAACTCGTCGC 5643681 Query 243584 TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643 | ||| | |||||||| || ||||| ||||||||| | | | |||| || || Sbjct 5643680 TGATGTGCCAGTACATTGAGTTCGTGGCCGACCGCCTGCTGTACTCGCTGGGCGTGTCGA 5643621 Query 243644 AAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 | | |||||| | |||||||| || | || ||||| | || ||||| || || || | Sbjct 5643620 AGATCTACAACGCGAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGA 5643561 Query 243704 CTAACTTCTTCGAAAAGCGTGT 243725 | ||||||||||| |||||||| Sbjct 5643560 CCAACTTCTTCGAGAAGCGTGT 5643539 Score = 91.5 bits (100), Expect = 3e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || || ||||| ||||| |||| |||||||| || || || ||||| || Sbjct 6653834 GGGGAAGCCCTCGAGCTGGCCGTTGGCAATGGCGCGCATGAGCGTCGACTTACCACAACC 6653893 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || || ||||||||||| |||| || ||||| || | || | |||||||| Sbjct 6653894 GTTGGGGCCGCACAGACCGTAACGGTGGCCGCGCTTGAGGCGAAGGCGGGCGTTGTTCAG 6653953 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATC 334348 ||||| | ||||| || || || || || || || | ||||| || Sbjct 6653954 CAGAATCATACCACCGTAAGCAAGCGAGAACTCGCAGTTGCACAGGTC 6654001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102878841286700