Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq7 102 6e-17 seq10 86.0 5e-12 >seq7 Length=4006126 Score = 102 bits (112), Expect = 6e-17 Identities = 169/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 108336 CGTAGCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAA 108395 ||| ||||| | || | ||||| |||| || || ||||| | ||| | |||||| Sbjct 1026960 CGTGGCCGGCCTGGGCATCACGGCGGGCGCGCACCGCCTGTGGTCGCACCGCGGCTACAA 1027019 Query 108396 GGCCACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACAC 108455 ||||| ||| | | || ||||| ||| ||| |||| |||| || ||| Sbjct 1027020 GGCCAAGCTGCCGCTGCGCGTCTTCCTCATGCTGTGCAACTCGATGGCCTTCGAGGGCAC 1027079 Query 108456 CATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGA 108515 |||| ||||| || ||| ||| | || ||||||||| ||| |||||||||||||| Sbjct 1027080 CATCTTCGAGTGGTCGCGCGACCACCGCGTGCACCACAAGGCCTCGGACACGACGGCCGA 1027139 Query 108516 CCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAA 108575 ||| |||||| | | | || ||| ||||||||| |||| ||| ||||| || ||| Sbjct 1027140 CCCGCACAACTCGGGCCGCGGCCTCTTCTTCTCGCACATGGGCTGGGTCATGGTGCGCAA 1027199 Query 108576 GGAC 108579 | || Sbjct 1027200 GCAC 1027203 >seq10 Length=2388181 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || ||| | || |||||||||||||| ||||||| |||||||| |||||| || | | Sbjct 113275 GACCACCGCGTGCACCACAAGTACTCGGACACGAGCGCCGACCCGCACAACTCCGGCCGC 113216 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGATCTCG 108594 || |||| ||| | ||| |||| ||||| || | | ||||||||| | ||| || | Sbjct 113215 GGCTTCTTCTTCGCACACATGGGCTGGCTGCTGGTCAAGAAGGACCCCAAGGTGGTCAAG 113156 Query 108595 GCCGG 108599 ||||| Sbjct 113155 GCCGG 113151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381772418465808