Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq7 208 1e-48 >seq7 Length=4006126 Score = 208 bits (230), Expect = 1e-48 Identities = 520/773 (67%), Gaps = 25/773 (3%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCT---CAGATAGTACAT 203895 |||||| |||||||||| ||||||| |||| | || || || |||||||| Sbjct 2438888 CTTGTCGACCGTGAACTTGATGGCGT---CGGCTTTCGGGCGTCCGCGCATGTAGTACAT 2438944 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||||||||| || ||||||| ||| |||| | |||||| || | || ||||| | | | Sbjct 2438945 GCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTTGCTGATGGT 2439004 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 |||||||| ||||| || || || |||||||| ||| ||| ||||||| || || | Sbjct 2439005 CGGGTCGGCGATGTGGATATTGAGCGACTGGCTCTGGCAAATG-TAGGCGCCGCGGTCGG 2439063 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | | || | | | || |||||| |||||||||||||||||| || || || Sbjct 2439064 CCGACAGGTCCAGCACGGCCTTCTGTTTGATCTCCCACACCGTCTTGTACTTCTCCTTGA 2439123 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT-CAT 204132 ||| | || | | | || | ||| | |||||| |||| || | ||| | Sbjct 2439124 CGTGGTCCGGGATGGCCT-TGACCTTCTGCACGGAGCCGCCGTCGTTCAGGA-TCTGGTT 2439181 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | | || | ||| ||||||| | |||||||||| || ||||| ||||| Sbjct 2439182 GCGCACGTCGGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATCAGGTACTTGTTGAC 2439241 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 |||| || || |||| |||||| | ||| || ||| |||| ||| | || |||| Sbjct 2439242 GATCGTGAACTCGCCGGCCAGCACGCGGCGGTTGTACATGTTGGACGTGTACGGCTCGAT 2439301 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 | |||||||||||||| ||||| || || ||| ||||||||||| |||| ||||| Sbjct 2439302 GGACTCGTTGTTGCCGAGGATCTGGGCCGTCGAGGCAGTGGGCATGGGGGCCACCAGCAG 2439361 Query 204313 GGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAG------AGGTCCAGTCGTG 204366 |||||||||| |||| || || | |||||| | || |||| || Sbjct 2439362 CGAGTTGCGCAGGCCGTGCTTGATCACGTTCTCCTTCAGCGCCGCCCAGTTCCACAGGTC 2439421 Query 204367 CATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCT 204426 | || || ||| | |||||||||||||||||||| |||||||| | ||| | || Sbjct 2439422 CGACG-ACGGGG--TGACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTGGCCGGCGA 2439478 Query 204427 GCCCTTGTACGTCGGATA-AGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGG 204485 ||||| | ||||| || ||| || ||| | || | || || | |||||| Sbjct 2439479 GCCCTGGAACGTCTCGTACGGGCCGA-GCTCCTTGGCGATCTCCATGGACGTCTCCATGG 2439537 Query 204486 CGTGATAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGC-GGCCTCCGTTCCGTCA 204544 | |||||| |||||||| ||||||| | || | || || ||||||| | || Sbjct 2439538 CTGCATAGTAGATGGTCTCGAAGATCTTCTTG-TTGAGCTCGCGGGCCTCCTCGCTCTCG 2439596 Query 204545 AACGCCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCC 204597 ||||| | || | | ||| ||||||| | |||||| || ||||| || Sbjct 2439597 AACGCGAAGTTCATGAGGATGAACGCGTCCGCGAGGCCCTGGACGCCGATGCC 2439649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154384965920