Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq7 178 2e-39 seq1 116 5e-21 seq5 109 7e-19 seq18 105 8e-18 >seq7 Length=4006126 Score = 178 bits (196), Expect = 2e-39 Identities = 460/695 (66%), Gaps = 7/695 (1%) Strand=Plus/Minus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATG 111605 || ||||| ||||||| |||||| |||||||| | || | || || || Sbjct 2440717 TACTTTGGCTTCAAGACGCTCGAGCGCGGCTACCTCTTCCGCGTGAACGGCAAGGTGGTG 2440658 Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 || ||| ||| | ||| | ||||| || ||| | || ||||| | || ||| | Sbjct 2440657 GAGCGCCCGCAGCAGATGATTATGCGCGTGGCGCTGGGCATCCACAAGAGCGACATTAAG 2440598 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACC 111725 | | | ||||| ||||| ||||| | | |||| ||||| || || || Sbjct 2440597 GCCGCCCTCGAGACGTACGAGCTCATGTCGCAAAAGTTTTTCACGCACGCGACCCCGACA 2440538 Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785 || || ||||| || || || | || ||| |||| || ||||| | || | || Sbjct 2440537 CTGTTTAACGCCGGCACGCCGCGCCCACAACTGTCGTCCTGCTTCCTGTTGGCCATGCAG 2440478 Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845 || || || || | ||||| |||| ||| |||| | || || ||||| |||||| Sbjct 2440477 GACGACTCCATTGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCTAAGTGG 2440418 Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGT 111905 || || |||||||| || ||| || | || | |||| || || | || Sbjct 2440417 GCCGGAGGTATCGGCATCAGCATGCACAACATCCGCGCCACGAATAGCTACATCCGTGGC 2440358 Query 111906 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 111965 || || || || |||| || || || ||||| ||||| || |||| ||| || ||| Sbjct 2440357 ACGAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGCGTGTTCAACGACACGGCCCGC 2440298 Query 111966 TATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022 || || |||| | || | |||||||| || |||| |||| |||||||| ||| Sbjct 2440297 TACGTGGACCAGGGCGGAGGCAAGCGCAAGGGCTCGTTCGCCATCTACCTTGAGCCCTGG 2440238 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082 |||||||| | | |||||||| || |||| ||||| || | ||| | | | | Sbjct 2440237 CACGCGGACGTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAACGAGCTG-CACCG 2440179 Query 112083 TGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141 || ||||| || |||| ||| || ||| | || ||||| ||||||||||| || |||| Sbjct 2440178 CGCGCGCGACCTGTTCTACGCGCTGTGGGTGCCCGATCTGTTCATGAAGAGGGTGGAGGC 2440119 Query 112142 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGG 112200 | |||||| ||| ||| || || || | | || || || |||| ||| ||| | || Sbjct 2440118 CAATGGCAAGTGGAGTCTGTTCTGCCCCAATGAAGCTCCTGGGCTCTACGAGTGCTG-GG 2440060 Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAG 112235 | ||||||||||| |||| || |||||||||| Sbjct 2440059 GCGAGGAGTTTGAGACCCTTTATGAAAAGTACGAG 2440025 >seq1 Length=13391543 Score = 116 bits (128), Expect = 5e-21 Identities = 189/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| ||| || ||||| | | |||||| | || || | ||||||| | Sbjct 5641859 CTCATCGACACGTACATCAAGGACGCGGTGGAGAAGGACCACCTGCTGCGAGCCATCGAG 5641918 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG--- 102164 || | || ||| | | ||||||||| | ||||| | ||||||| || | | Sbjct 5641919 ACGATCCCGTGTGTCAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGGGTG 5641978 Query 102165 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 ||| ||| || | ||||| || | || || || ||| ||||| ||||||||||| Sbjct 5641979 TCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCTGCTGTGGAGGGCATCTTCTTCTC 5642034 Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 || || |||||| | || | |||||||||||||| || || ||||| ||||| |||| Sbjct 5642035 GGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCTGGTCTGAGCTT 5642094 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||| |||||||| ||| || || ||||| Sbjct 5642095 CTCGAACGAGCTGATCAGCCGCGATGAGGG 5642124 Score = 116 bits (128), Expect = 5e-21 Identities = 189/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| ||| || ||||| | | |||||| | || || | ||||||| | Sbjct 5644101 CTCATCGACACGTACATCAAGGACGCGGTGGAGAAGGACCACCTGCTGCGAGCCATCGAG 5644042 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG--- 102164 || | || ||| | | ||||||||| | ||||| | ||||||| || | | Sbjct 5644041 ACGATCCCGTGTGTCAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGGGTG 5643982 Query 102165 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 ||| ||| || | ||||| || | || || || ||| ||||| ||||||||||| Sbjct 5643981 TCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCTGCTGTGGAGGGCATCTTCTTCTC 5643926 Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 || || |||||| | || | |||||||||||||| || || ||||| ||||| |||| Sbjct 5643925 GGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCTGGTCTGAGCTT 5643866 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||| |||||||| ||| || || ||||| Sbjct 5643865 CTCGAACGAGCTGATCAGCCGCGATGAGGG 5643836 >seq5 Length=6830280 Score = 109 bits (120), Expect = 7e-19 Identities = 190/272 (70%), Gaps = 12/272 (4%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGAT--GGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCC 102105 ||||| |||| ||| || |||||| | || |||||||| || || || || || Sbjct 1397343 CTCATCGACACGTACATCAAGGATACGATG--GAGAAGAACCACCTGTTGCGCGCTATTG 1397400 Query 102106 AAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG- 102164 | || | || || | | ||||| ||| | ||||| | ||||||| || | | Sbjct 1397401 AGACGATCCCGTGCGTCAAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGGG 1397460 Query 102165 --TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTC 102221 ||| ||| || | ||||| || | || || || ||||| || ||||||||| Sbjct 1397461 TGTCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCTGCGGTTGAAGGCATCTTCTTC 1397516 Query 102222 TCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC 102281 || || ||||||||| | || | |||||||||||||| || |||||||| || || || Sbjct 1397517 TCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGAGC 1397576 Query 102282 TTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||||||||||| ||| || |||||||| Sbjct 1397577 TTCTCCAACGAGCTCATCAGCCGCGACGAGGG 1397608 Score = 105 bits (116), Expect = 8e-18 Identities = 189/272 (69%), Gaps = 12/272 (4%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGAT--GGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCC 102105 ||||| |||| ||| || |||||| | || |||||||| || || || || || Sbjct 1374141 CTCATCGACACGTACATCAAGGATACGATG--GAGAAGAACCACCTGTTGCGCGCTATTG 1374084 Query 102106 AAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG- 102164 | || | || || | | ||||| ||| | ||||| | ||||||| || | | Sbjct 1374083 AGACGATCCCGTGCGTCAAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGGG 1374024 Query 102165 --TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTC 102221 ||| ||| || | ||||| || | || || || ||||| || ||||||||| Sbjct 1374023 TGTCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCTGCGGTTGAAGGCATCTTCTTC 1373968 Query 102222 TCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC 102281 || || ||||||||| | || | |||||||||||||| || |||||||| || || || Sbjct 1373967 TCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGAGC 1373908 Query 102282 TTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||||||||||| ||| || ||||||| Sbjct 1373907 TTCTCCAACGAGCTCATCAGCCGCAACGAGGG 1373876 Score = 91.5 bits (100), Expect = 2e-13 Identities = 326/498 (65%), Gaps = 19/498 (4%) Strand=Plus/Minus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 ||| ||||||||||| |||||| | || |||||| | || ||| ||||| || Sbjct 1088836 ACGGTCAAAGCGACCGGGGCGACACAATGCCGGATCAAGCACCTCCGGGCGGTTCGTAGC 1088777 Query 15944 GGCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTG 16000 ||| ||||| | || || | |||| ||||| |||||||||||||||| | ||| Sbjct 1088776 GGCAATGACGATAACTCCATTGACGTTTCCCTCAAAGCCATCCATCTCTGTCAGCAACTG 1088717 Query 16001 GTTAATAGTTTGTTCCCGTTCATCATTCG-CTGGCATACCACCAGCACTGCGTTGCTTT- 16058 ||| | || || ||||||||||| || | | | || ||||| ||| ||||| Sbjct 1088716 GTTCAGCGTCTGCTCCCGTTCATCGTTGGAGTTGAAT-CCACC------GCG-AGCTTTA 1088665 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC- 16117 ||| ||||| || || ||||| |||| ||| || | | | | ||||| | || | Sbjct 1088664 GCCAACGCATCGATTTCGTCAATAAAGATGATACACTGCGGGTACT-GCGAG-GCCTGCG 1088607 Query 16118 -AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 16176 ||||| ||||| || | | ||||| ||| || | |||||| || || | | | Sbjct 1088606 TGAAGAGGTCCCGCACTCTCGCAGCGCCTCGACCCACCAGCATCTCGACGAAATCCGACG 1088547 Query 16177 CGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 16236 | || || | ||||| || | |||| |||| |||| || || || |||| Sbjct 1088546 CTGAGCAGAACAAGAAGGCCACCCCCGCTTCAGATGCAACAGCTCTAGCCAGCAGCGTCT 1088487 Query 16237 TACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAA 16296 | || || || | ||| ||| | | ||| || | ||||||||| | | Sbjct 1088486 TGCCGGTGCCCGATGGACCGCAGAGCATCACTCCTTTGGGCACTTTGGCGCCAATGGCCT 1088427 Query 16297 AGTATCTCTCAGGTTG-CTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCG 16355 ||| || | || || || ||| || ||||||| ||| |||| || | ||||| || Sbjct 1088426 GGTACCTGGCCGGGTGTCTCAAG-AAGTCCACAACCTCCTCCAGCTCCTTCCTGGCGCCG 1088368 Query 16356 TCAATCCCCTCAACATCG 16373 ||||| ||| | |||||| Sbjct 1088367 TCAATACCCGCCACATCG 1088350 Score = 91.5 bits (100), Expect = 2e-13 Identities = 326/498 (65%), Gaps = 19/498 (4%) Strand=Plus/Minus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 ||| ||||||||||| |||||| | || |||||| | || ||| ||||| || Sbjct 1235257 ACGGTCAAAGCGACCGGGGCGACACAATGCCGGATCAAGCACCTCCGGGCGGTTCGTAGC 1235198 Query 15944 GGCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTG 16000 ||| ||||| | || || | |||| ||||| |||||||||||||||| | ||| Sbjct 1235197 GGCAATGACGATAACTCCATTGACGTTTCCCTCAAAGCCATCCATCTCTGTCAGCAACTG 1235138 Query 16001 GTTAATAGTTTGTTCCCGTTCATCATTCG-CTGGCATACCACCAGCACTGCGTTGCTTT- 16058 ||| | || || ||||||||||| || | | | || ||||| ||| ||||| Sbjct 1235137 GTTCAGCGTCTGCTCCCGTTCATCGTTGGAGTTGAAT-CCACC------GCG-AGCTTTA 1235086 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC- 16117 ||| ||||| || || ||||| |||| ||| || | | | | ||||| | || | Sbjct 1235085 GCCAACGCATCGATTTCGTCAATAAAGATGATACACTGCGGGTACT-GCGAG-GCCTGCG 1235028 Query 16118 -AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 16176 ||||| ||||| || | | ||||| ||| || | |||||| || || | | | Sbjct 1235027 TGAAGAGGTCCCGCACTCTCGCAGCGCCTCGACCCACCAGCATCTCGACGAAATCCGACG 1234968 Query 16177 CGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 16236 | || || | ||||| || | |||| |||| |||| || || || |||| Sbjct 1234967 CTGAGCAGAACAAGAAGGCCACCCCCGCTTCAGATGCAACAGCTCTAGCCAGCAGCGTCT 1234908 Query 16237 TACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAA 16296 | || || || | ||| ||| | | ||| || | ||||||||| | | Sbjct 1234907 TGCCGGTGCCCGATGGACCGCAGAGCATCACTCCTTTGGGCACTTTGGCGCCAATGGCCT 1234848 Query 16297 AGTATCTCTCAGGTTG-CTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCG 16355 ||| || | || || || ||| || ||||||| ||| |||| || | ||||| || Sbjct 1234847 GGTACCTGGCCGGGTGTCTCAAG-AAGTCCACAACCTCCTCCAGCTCCTTCCTGGCGCCG 1234789 Query 16356 TCAATCCCCTCAACATCG 16373 ||||| ||| | |||||| Sbjct 1234788 TCAATACCCGCCACATCG 1234771 >seq18 Length=670814 Score = 105 bits (116), Expect = 8e-18 Identities = 189/272 (69%), Gaps = 12/272 (4%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGAT--GGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCC 102105 ||||| |||| ||| || |||||| | || |||||||| || || || || || Sbjct 7675 CTCATCGACACGTACATCAAGGATACGATG--GAGAAGAACCACCTGTTGCGCGCTATTG 7732 Query 102106 AAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG- 102164 | || | || || | | ||||| ||| | ||||| | ||||||| || | | Sbjct 7733 AGACGATCCCGTGCGTCAAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGGG 7792 Query 102165 --TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTC 102221 ||| ||| || | ||||| || | || || || ||||| || ||||||||| Sbjct 7793 TGTCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCTGCGGTTGAAGGCATCTTCTTC 7848 Query 102222 TCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC 102281 || || ||||||||| | || | |||||||||||||| || |||||||| || || || Sbjct 7849 TCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGAGC 7908 Query 102282 TTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||||||||||| ||| || ||||||| Sbjct 7909 TTCTCCAACGAGCTCATCAGCCGCAACGAGGG 7940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741763739040