Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq7 167 3e-36 seq3 114 2e-20 seq12 95.1 1e-14 seq1 93.3 5e-14 >seq7 Length=4006126 Score = 167 bits (184), Expect = 3e-36 Identities = 882/1391 (63%), Gaps = 48/1391 (3%) Strand=Plus/Plus Query 109710 CTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTA 109769 ||||||||| | || || || || || ||| ||| ||| ||||| | |||||| Sbjct 2439233 CTTGTTGACGATCGTGAACTCGCCGGCCAGCACGCGGCGGTTGTACATGTTGGACGTGTA 2439292 Query 109770 GGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGC 109829 || |||| |||| |||||||| ||||| || || || || || ||||||||||| || Sbjct 2439293 CGGCTCGATGGACTCGTTGTTGCCGAGGATCTGGGCCGTCGAGGCAGTGGGCATGGGGGC 2439352 Query 109830 CATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAAT- 109888 || || || ||| || || || | | | | || ||| || || |||| | Sbjct 2439353 CACCAGCAGCGAGTTGCGCAGGCCGTGCTTGATCACGTTCTCCTTCAGCGCCGCCCAGTT 2439412 Query 109889 -CATAA---CGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCC 109944 || | |||| || | | | | ||||||| || || | | ||| Sbjct 2439413 CCACAGGTCCGACGACGGGGT---GACGC-----CCCACATGTCGAACTGGAAGATGCCC 2439464 Query 109945 TCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGAT 110004 | || || || |||| ||| ||||||||| || ||| ||| | ||| Sbjct 2439465 TTGCTGGCCGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGCTCCTTGGCGATCTCCATG 2439524 Query 110005 GAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAG---GCGA 110061 || | ||| | || |||| || || ||||| || || | || |||| ||| Sbjct 2439525 GACGTCTCCATGGCTGCATAGTAGATGGTCTCGAAGATCTTC---TTGTTGAGCTCGCGG 2439581 Query 110062 GACTCTTCACAGTCGAAGG-GAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAAC 110120 | ||| || | ||||| | |||| || | || | ||| | ||||| || ||||| || Sbjct 2439582 GCCTCCTCGCTCTCGAACGCGAAGTTCATGAGGA-TGAACGCGTCCGCGAGGCCCTGGAC 2439640 Query 110121 ACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAA 110180 |||| || |||||||| || |||||| || || || | |||||||| | Sbjct 2439641 GCCGATGCCGATGGGGCGGTGACGCATGTTGGACTTGCGCGCCTCGGCCACGGGGTAGTA 2439700 Query 110181 GTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTT 110240 |||| |||||||||| || || || ||| | ||| |||| || | ||| || Sbjct 2439701 GTTGACGTCGATGACCTTGTTCAGGTTGCGCGTGATGACCTTGGTGACCTCGTAGAGCTT 2439760 Query 110241 GTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAG 110300 | ||| |||||| | |||| ||| | ||||| || || | || || || Sbjct 2439761 CTGGTAGTCGAACACGCCCTCCTCC------ACAAACTTGGGCAGCGCCACCGAGGCCAG 2439814 Query 110301 ATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG-- 110358 |||||||| | |||||| | ||||| |||| | || ||||||||| Sbjct 2439815 GTTGCACACGGCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAAGTTGCT 2439874 Query 110359 -GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATA 110417 || | | | ||| | ||||| ||| ||||| || |||| || ||||| || Sbjct 2439875 GGAGCGGATCGT---ACCGAGGTTCTGCTGGTTCGACTTCCGGTTGGCCGCGTCCTTGTA 2439931 Query 110418 GAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGC 110477 ||||||| | || || || || |||| | | || ||||| ||| || | || Sbjct 2439932 GAGCATGAAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA--CAGCTGC 2439989 Query 110478 GGCGGG--GACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCT 110533 ||| | || || |||| ||| | || |||| ||||||||| || | | || Sbjct 2439990 TGCGCGTTGATCGTCTTGCGC--GCGCGTCCCTCCTTCTCGTACTTTTCATAAAGGGTCT 2440047 Query 110534 CAAATTCCTGTCCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGAC 110592 |||| |||| || | ||| || | || || || | | ||| ||||| || | Sbjct 2440048 CAAACTCCTCGCCCCAGCAC-TCGTAGAGCCCAGGAGCTTCATTGGGGCAGAACAGACTC 2440106 Query 110593 CAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAA 110652 || || ||| |||| ||||||||||||||||| || || | ||||| ||| |||| Sbjct 2440107 CACTTGCCATTGGCCTCCACCCTCTTCATGAACAGATCGGGCACCCACAGCGCGTAGAAC 2440166 Query 110653 AGGTCACG-GCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCAT 110711 ||||| || || | || | || | || ||||| ||| || |||| || || | Sbjct 2440167 AGGTCGCGCGCGCGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAA 2440225 Query 110712 GATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGC 110768 | |||| |||||| || || || |||| |||| || ||||| || | || | Sbjct 2440226 CACGTCCGCGTGCCAGGGCTCAAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCTCCGCC 2440285 Query 110769 CTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGA 110828 ||||| || ||||| || ||| | ||||| || | ||||| || || || |||| ||| Sbjct 2440286 CTGGTCCACGTAGCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCATTGGA 2440345 Query 110829 TTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACC 110888 || || || || | || | || |||| || |||| ||| || || || Sbjct 2440346 CGAGCCGTTCGTGCCACGGATGTAGCTATTCGTGGCGCGGATGTTGTGCATGCTGATGCC 2440405 Query 110889 AATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATC 110948 ||||| || ||||||||| || || |||| |||| || | || || || || Sbjct 2440406 GATACCTCCGGCCCACTTAGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTC 2440465 Query 110949 AATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCC 111008 ||| || || ||| |||| | || ||||| || |||| || || || ||||| || Sbjct 2440466 AATGGAGTCGTCCTGCATGGCCAACAGGAAGCAGGACGACAGTTGTGGGCGCGGCGTGCC 2440525 Query 111009 CGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGT 111068 || || || ||||| || ||||| || |||| | ||| ||||| | ||| || Sbjct 2440526 GGCGTTAAACAGTGTCGGGGTCGCGTGCGTGAAAAACTTTTGCGACATGAGCTCGTACGT 2440585 Query 111069 GTCGAGTGCGG 111079 ||||| |||| Sbjct 2440586 CTCGAGGGCGG 2440596 >seq3 Length=10773376 Score = 114 bits (126), Expect = 2e-20 Identities = 339/514 (66%), Gaps = 23/514 (4%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| || || || || || | || | ||||| |||||| | ||||| Sbjct 6934502 ATCTGGCGGTCGAATCGTCCGGGACGCAGGATGGCCTTGTCAAGGATATCGGCGCGGTTC 6934443 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | |||| || || | || ||| | || |||||| ||||| || || Sbjct 6934442 GTACCAGCAAGCACCACCACACC---CTCGCTCGAGTTGAAACCATCCATCTCGACCAGC 6934386 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTG------GAGGGCATACCACCTGC--CG 11665 | |||||| | ||| | |||||||| |||||| ||| | || | ||| || Sbjct 6934385 AACTGGTTCAGCGTGTTCTCACGCTCGTCGTTGCCGCCCGAGAAGTTTCC-CTTGCTACG 6934327 Query 11666 AACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCAC 11725 ||| | ||||| || || || || ||||| ||||| ||||| || || | Sbjct 6934326 TGCGCGGG----CCACAGCATCGATTTCGTCAATGAACACGATGCACGGGGCATTCGCGC 6934271 Query 11726 GTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGA 11785 | |||| | ||| || ||||| ||||| || || ||||| ||||||||||||| || Sbjct 6934270 GCGCCTCCTTGAACAGGTCACGCACACGGGACGGACCCACACCGACGAACATCTCAATGA 6934211 Query 11786 AGTTTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCG 11844 | | | | || | ||||| ||| || || | | |||||||||| | || || Sbjct 6934210 AATCCGAACCGGAGATGCTGAA-GAAAGGCACGCTGGCCTCACCAGCGGTAGCCTTCGCC 6934152 Query 11845 AGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCA 11904 || || ||||||||||| || || | ||| | || || ||||| ||||||||| ||| Sbjct 6934151 AGCAGCGTCTTACCCGTGCCGGGCGGGCCAACAAGCAGCGCGCCCTTGGGGATCTTCGCA 6934092 Query 11905 CC-ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTC 11963 || | ||| | |||||| | || ||||||||||| | |||| | |||| Sbjct 6934091 CCGAGCTCC-GTGAAGCGCTTCTGATTGCGAAGGAAGTCCACGAACTCCATGATCTCCTT 6934033 Query 11964 CTTGGCGGAGTCGATACCCTCAACATCGGTGAAA 11997 |||||| ||| | ||| | || || ||||| Sbjct 6934032 CTTGGCCTCGTCCACACCGGCCACGTCCTTGAAA 6933999 >seq12 Length=2105860 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/165 (73%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489 ||||| || || || || || || || | |||||| ||||| || | ||||| | ||| Sbjct 1778901 TTACCGCGCAGCGGGAACACGCCGTAGTAATCTCTGCCCACCACAGCAAGACCGCCCACA 1778842 Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGT--G 168547 |||| || || || ||||| |||||||| | ||| || || || | || || | | Sbjct 1778841 GCGACCGTCTTGGCGGAATCTCCCTCTGTGAGGATTAGAGTGCAGT--CCTTGCTCTTGG 1778784 Query 168548 CCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGTGA 168592 |||||||||| | ||| || ||||||| ||||||||||| |||| Sbjct 1778783 CCGTACCAGCGTGGTTGGCGTCGTCCAGCTTGGGGATACCCGTGA 1778739 >seq1 Length=13391543 Score = 93.3 bits (102), Expect = 5e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT-TC 11735 |||| |||||||||||| |||||||| | ||| ||||| || | | || | | || Sbjct 2236324 CCGATAGCGTCAATCTCGTCGATGAAGATGATGCACGGCGCCTTC-CGCTTGGCCGACTC 2236266 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| || || || ||||| ||| || || || ||| ||||||| |||| | | | | Sbjct 2236265 GAACAGGTCGCGCACACGTCGCGCGCCGACGCCAACGTACATCTCCTCGAACTCGGAGCC 2236206 Query 11796 AGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 || | | | |||||| || | ||||||||||||||| || ||||| | ||||| Sbjct 2236205 CGACGAGTAGAAGAAGGGCACGCCGGCCTCACCAGCGATGGCGCGGGCGAGCAACGTCTT 2236146 Query 11856 ACCCGTACCAGGTGCACCAG 11875 |||||||| || | ||||| Sbjct 2236145 GCCCGTACCGGGCGGACCAG 2236126 Score = 86.0 bits (94), Expect = 7e-12 Identities = 150/217 (69%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || ||||| || ||| ||||| || ||||| || |||||||| || || | ||| Sbjct 5642124 CCCTCATCGCGGCTGATCAGCTCGTTCGAGAAGCTCAGACCAGGCATCAGGCCGCGCTTC 5642065 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||||| || || || || |||||||||||||||||| ||||| Sbjct 5642064 TTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACAGCAGCGAAC 5642005 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGA----CTTGTCGAACCACTTGAGAGCCCAGTT 119689 || | |||||||| | | | ||| | | |||| |||||||||| ||||||| Sbjct 5642004 GCCAGCAGACGCTCCG-GGTACGACGACACCCGCGGGTCGCACCACTTGAGCGCCCAGTG 5641946 Query 119690 GGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCT 119726 || || || | || |||| || | ||||||| Sbjct 5641945 CGCTTTCTTCTTGACACACGGGATCGTCTCGATGGCT 5641909 Score = 86.0 bits (94), Expect = 7e-12 Identities = 150/217 (69%), Gaps = 5/217 (2%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || ||||| || ||| ||||| || ||||| || |||||||| || || | ||| Sbjct 5643836 CCCTCATCGCGGCTGATCAGCTCGTTCGAGAAGCTCAGACCAGGCATCAGGCCGCGCTTC 5643895 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||||| || || || || |||||||||||||||||| ||||| Sbjct 5643896 TTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACAGCAGCGAAC 5643955 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGA----CTTGTCGAACCACTTGAGAGCCCAGTT 119689 || | |||||||| | | | ||| | | |||| |||||||||| ||||||| Sbjct 5643956 GCCAGCAGACGCTCCG-GGTACGACGACACCCGCGGGTCGCACCACTTGAGCGCCCAGTG 5644014 Query 119690 GGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCT 119726 || || || | || |||| || | ||||||| Sbjct 5644015 CGCTTTCTTCTTGACACACGGGATCGTCTCGATGGCT 5644051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975396299600