Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq6 102 5e-17 seq2 91.5 1e-13 >seq6 Length=4785000 Score = 102 bits (112), Expect = 5e-17 Identities = 143/198 (72%), Gaps = 11/198 (6%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| |||||||| || | || | || || ||||| || ||||| || || Sbjct 2506671 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 2506730 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGAC-----GG 34908 || || |||||||| |||| | ||||||||||| || ||||| ||||| Sbjct 2506731 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 2506790 Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 ||||| ||| || | ||| || || | || ||||| || ||||| || ||||||| Sbjct 2506791 ATGCTGTCG---GAC--GGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCA 2506845 Query 34969 CAAAGATCTGCAT-ATTC 34985 ||||||||||||| |||| Sbjct 2506846 CAAAGATCTGCATGATTC 2506863 >seq2 Length=11587142 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || || ||||| || ||||| || Sbjct 3716229 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 3716170 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| || |||||| Sbjct 3716169 ATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTG 3716110 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | || || || || || || || |||||||| Sbjct 3716109 TCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACG 3716050 Query 34971 AAGATCTGCATATTC 34985 ||||||||||| ||| Sbjct 3716049 AAGATCTGCATCTTC 3716035 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || || ||||| || ||||| || Sbjct 3716457 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 3716398 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| || |||||| Sbjct 3716397 ATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTG 3716338 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | || || || || || || || |||||||| Sbjct 3716337 TCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACG 3716278 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 3716277 AAGATCTGCAT 3716267 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || || ||||| || ||||| || Sbjct 3716685 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 3716626 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| || |||||| Sbjct 3716625 ATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTG 3716566 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | || || || || || || || |||||||| Sbjct 3716565 TCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACG 3716506 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 3716505 AAGATCTGCAT 3716495 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || |||||||| || ||||| || Sbjct 4538373 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 4538432 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | || |||||||| ||||| || |||||| Sbjct 4538433 ATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTG 4538492 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | || || || || ||||| || ||||| || Sbjct 4538493 TCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACG 4538552 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 4538553 AAGATCTGCAT 4538563 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || |||||||| || ||||| || Sbjct 4538601 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 4538660 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | || |||||||| ||||| || |||||| Sbjct 4538661 ATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTG 4538720 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | || || || || ||||| || ||||| || Sbjct 4538721 TCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACG 4538780 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 4538781 AAGATCTGCAT 4538791 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || |||||||| || ||||| || Sbjct 4538829 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 4538888 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | || |||||||| ||||| || |||||| Sbjct 4538889 ATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTG 4538948 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | || || || || ||||| || ||||| || Sbjct 4538949 TCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTGACG 4539008 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 4539009 AAGATCTGCAT 4539019 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || |||||||| || ||||| || Sbjct 4539057 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 4539116 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | || |||||||| ||||| || |||||| Sbjct 4539117 ATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTG 4539176 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | || || || || ||||| || ||||| || Sbjct 4539177 TCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACG 4539236 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 4539237 AAGATCTGCAT 4539247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633275569296