Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq7 141 1e-28 seq1 107 2e-18 seq5 95.1 1e-14 seq18 91.5 2e-13 >seq7 Length=4006126 Score = 141 bits (156), Expect = 1e-28 Identities = 422/639 (66%), Gaps = 9/639 (1%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| | ||| | ||||| || || | ||||||||| | |||||| | | | Sbjct 2440652 CCCGCAGCAGATGATTATGCGCGTGGCGCTGGGCATCCACAAGAGCGACATTAAGGCCGC 2440593 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | | ||||| ||||| ||||| ||| | |||| ||||| || || || || || Sbjct 2440592 CCTCGAGACGTACGAGCTCATGTCGCAAAAGTTTTTCACGCACGCGACCCCGACACTGTT 2440533 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 || || || || || | || || |||| |||||||| | |||| |||| || Sbjct 2440532 TAACGCCGGCACGCCGCGCCCACAACTGTCGTCCTGCTTCCTGTTGGCCATGCAGGACGA 2440473 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| || | || ||||| | || || | | |||| ||| ||||| |||||||| || Sbjct 2440472 CTCCATTGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCTAAGTGGGCCGG 2440413 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAA 75509 ||||| || || ||| || | | | |||| || | || || || || || | Sbjct 2440412 AGGTATCGGCATCAGCATGCACAACATCCGCGCCACGAATAGCTAC-ATCCGTGGCACGA 2440354 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | || || |||| || || || ||||| ||||| || |||| ||| || ||||| | Sbjct 2440353 ACGGCTCGTCCAATGGCATCATCCCCATGCTGCGCGTGTTCAACGACACGGCCCGCTACG 2440294 Query 75570 TAAATCAAG-CGG-GGCGT-CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATG 75626 | | || | ||| ||| |||||||| || |||| ||||| | || || ||||| | Sbjct 2440293 TGGACCAGGGCGGAGGCAAGCGCAAGGGCTCGTTCGCCATCTACCTTGAGCCCTGGCACG 2440234 Query 75627 CCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA 75686 | || | | |||||||| || | || ||||| || |||| | || | | | Sbjct 2440233 CGGACGTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAACGA-GCTGCACCGCGCG 2440175 Query 75687 -GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 | || || || | | |||||| | || || || ||||||||| |||| |||| | Sbjct 2440174 CGCGACCTGTTCTACGCGCTGTGGGTGCCCGATCTGTTCATGAAGAGGGTGGAGGCCAAT 2440115 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGA 75804 || | ||| ||| ||||| || | | || || || |||| ||| || | ||| || Sbjct 2440114 GGCAAGTGGAGTCTGTTCTGCCCCAATGAAGCTCCTGGGCTCTACGAGTGCTG-GGGCGA 2440056 Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGG 75843 ||||||||| |||| || |||||| || ||||||| Sbjct 2440055 GGAGTTTGAGACCCTTTATGAAAAGTACGAGAAGGAGGG 2440017 >seq1 Length=13391543 Score = 107 bits (118), Expect = 2e-18 Identities = 350/532 (66%), Gaps = 20/532 (4%) Strand=Plus/Plus Query 64995 AGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGA 65054 ||||||| | || | || ||| | ||||||| ||| | ||||| | || |||| || Sbjct 5641909 AGCCATCGAGACGATCCCGTGTGTCAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGA 5641968 Query 65055 CACAAAG-TCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCT 65113 | | | | ||| || | | | ||||| || | ||||| || ||||||||| |||| Sbjct 5641969 CCCGCGGGTGTCG-TCGTACCCGGAGCGTCTGCTGGCGTTCGCTGCTGTGGAGGGCATCT 5642027 Query 65114 TCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCC 65173 ||||||| || || |||||| | || | ||| | |||||||| || || ||||| || | Sbjct 5642028 TCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCTGGTC 5642087 Query 65174 TATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC---CG 65230 | ||||||| || || || || ||| |||||||| | ||| ||| || || | Sbjct 5642088 TGAGCTTCTCGAACGAGCTGATCAGCCGCGATGAGGGCATGCACACGGACTTCGCTTGCC 5642147 Query 65231 TGGAGCTCTTCAAGACTTTGCGTAATAGACCCACTACCGAA----ACTATCCACGCCATC 65286 | | || |||| || || | || || ||| | | |||| ||| Sbjct 5642148 TCATGTACTCCAAG-CT---GGTGA---ACAAGCTGCCGGAGAGCCGCGTGCACGAGATC 5642200 Query 65287 GTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGT-AATCT 65345 ||| || || || || ||| | | |||| | ||| | || || ||| | || Sbjct 5642201 GTGCGCGATGCCGTGACCATCGAGCACGAGTTCGTGCGCGACTCGCTGCC-TGTGGAGCT 5642259 Query 65346 CATCGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCT 65405 ||||| |||||||| | ||||| | |||||||||||| ||| | || || || || Sbjct 5642260 GATCGGCATGAACTCGTCGCTGATGTGCCAGTACATTGAGTTCGTGGCCGACCGCCTGCT 5642319 Query 65406 CAAACAAGTTGGG-GTGCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAA 65464 || | |||| ||| | || | ||||||||||| || || |||| ||||| | Sbjct 5642320 -GTACTCGCTGGGCGTGTCGAAGATCTACAACGCGAAGAACCCGTTCGACTGGATGGACA 5642378 Query 65465 ACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 || || | || |||||||||||||| |||||||| || || || || Sbjct 5642379 TGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 5642430 Score = 107 bits (118), Expect = 2e-18 Identities = 350/532 (66%), Gaps = 20/532 (4%) Strand=Plus/Minus Query 64995 AGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGA 65054 ||||||| | || | || ||| | ||||||| ||| | ||||| | || |||| || Sbjct 5644051 AGCCATCGAGACGATCCCGTGTGTCAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGA 5643992 Query 65055 CACAAAG-TCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCT 65113 | | | | ||| || | | | ||||| || | ||||| || ||||||||| |||| Sbjct 5643991 CCCGCGGGTGTCG-TCGTACCCGGAGCGTCTGCTGGCGTTCGCTGCTGTGGAGGGCATCT 5643933 Query 65114 TCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCC 65173 ||||||| || || |||||| | || | ||| | |||||||| || || ||||| || | Sbjct 5643932 TCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCTGGTC 5643873 Query 65174 TATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC---CG 65230 | ||||||| || || || || ||| |||||||| | ||| ||| || || | Sbjct 5643872 TGAGCTTCTCGAACGAGCTGATCAGCCGCGATGAGGGCATGCACACGGACTTCGCTTGCC 5643813 Query 65231 TGGAGCTCTTCAAGACTTTGCGTAATAGACCCACTACCGAA----ACTATCCACGCCATC 65286 | | || |||| || || | || || ||| | | |||| ||| Sbjct 5643812 TCATGTACTCCAAG-CT---GGTGA---ACAAGCTGCCGGAGAGCCGCGTGCACGAGATC 5643760 Query 65287 GTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGT-AATCT 65345 ||| || || || || ||| | | |||| | ||| | || || ||| | || Sbjct 5643759 GTGCGCGATGCCGTGACCATCGAGCACGAGTTCGTGCGCGACTCGCTGCC-TGTGGAGCT 5643701 Query 65346 CATCGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCT 65405 ||||| |||||||| | ||||| | |||||||||||| ||| | || || || || Sbjct 5643700 GATCGGCATGAACTCGTCGCTGATGTGCCAGTACATTGAGTTCGTGGCCGACCGCCTGCT 5643641 Query 65406 CAAACAAGTTGGG-GTGCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAA 65464 || | |||| ||| | || | ||||||||||| || || |||| ||||| | Sbjct 5643640 -GTACTCGCTGGGCGTGTCGAAGATCTACAACGCGAAGAACCCGTTCGACTGGATGGACA 5643582 Query 65465 ACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 || || | || |||||||||||||| |||||||| || || || || Sbjct 5643581 TGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 5643530 >seq5 Length=6830280 Score = 95.1 bits (104), Expect = 1e-14 Identities = 331/503 (66%), Gaps = 14/503 (3%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAG-TCTCGCTCCTTCGCCGAG 65079 ||||||||||| | ||||| | || |||| ||| | | | ||| || | | | ||| Sbjct 1397419 AGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGGGTGTCG-TCGTACCCGGAG 1397477 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 || || | ||||| || || || || ||||||||||| || || |||||| | || Sbjct 1397478 CGTCTGCTGGCGTTCGCTGCGGTTGAAGGCATCTTCTTCTCGGGCTCCTTCTGCTCCATC 1397537 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | ||| | |||||||| || |||||||| ||||| ||||||| || || || || | Sbjct 1397538 TTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGAGCTTCTCCAACGAGCTCATCAGC 1397597 Query 65200 CGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAGA 65259 || || ||||| | ||| ||| || | |||| ||| | | | || | | | Sbjct 1397598 CGCGACGAGGGCATGCACACGGACTTCG-CGTG--CCTCATGTACTCCAAGC-TGGTCAA 1397653 Query 65260 CCCACT-ACCGAAA---CTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGG 65315 | ||| |||| | | |||| ||||| ||||| || || ||| | | Sbjct 1397654 CAAACTGCCCGAGAGCCGCGTGCACGAAATCGTTCGTGAGGCCGTCACCATCGAGCACGA 1397713 Query 65316 GTTCATCTTGGACGCACT-CCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCG 65374 |||| | | ||| | || ||| || | |||||||| |||||||| | |||| | Sbjct 1397714 GTTCGTGTGCGACTCGCTGCCCGTG-GAGCTCATCGGCATGAACTCGACGCTCATGTGCC 1397772 Query 65375 AGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG-GTGCCACCCATTTGG 65433 ||||||| |||| ||| | || || || || || | |||| ||||| | | Sbjct 1397773 AGTACATCGAGTTCGTGGCCGACCGCCTGCT-GTACTCGCTGGGCGTGCCCAAGCTCTAC 1397831 Query 65434 AACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTC 65493 |||| ||||| || || |||| ||||| | || || | || |||||||||||| Sbjct 1397832 AACGTCAAGAACCCCTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTC 1397891 Query 65494 TTTGAGAAGCGAGTTGGGGACTA 65516 || |||||||| || || || || Sbjct 1397892 TTCGAGAAGCGTGTGGGCGAGTA 1397914 Score = 91.5 bits (100), Expect = 2e-13 Identities = 330/503 (66%), Gaps = 14/503 (3%) Strand=Plus/Minus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAG-TCTCGCTCCTTCGCCGAG 65079 ||||||||||| | ||||| | || |||| ||| | | | ||| || | | | ||| Sbjct 1374065 AGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGGGTGTCG-TCGTACCCGGAG 1374007 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 || || | ||||| || || || || ||||||||||| || || |||||| | || Sbjct 1374006 CGTCTGCTGGCGTTCGCTGCGGTTGAAGGCATCTTCTTCTCGGGCTCCTTCTGCTCCATC 1373947 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | ||| | |||||||| || |||||||| ||||| ||||||| || || || || | Sbjct 1373946 TTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGAGCTTCTCCAACGAGCTCATCAGC 1373887 Query 65200 CGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAGA 65259 || | ||||| | ||| ||| || | |||| ||| | | | || | | | Sbjct 1373886 CGCAACGAGGGCATGCACACGGACTTCG-CGTG--CCTCATGTACTCCAAGC-TGGTCAA 1373831 Query 65260 CCCACT-ACCGAAA---CTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGG 65315 | ||| |||| | | |||| ||||| ||||| || || ||| | | Sbjct 1373830 CAAACTGCCCGAGAGCCGCGTGCACGAAATCGTTCGTGAGGCCGTCACCATCGAGCACGA 1373771 Query 65316 GTTCATCTTGGACGCACT-CCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCG 65374 |||| | | ||| | || ||| || | |||||||| |||||||| | |||| | Sbjct 1373770 GTTCGTGTGCGACTCGCTGCCCGTG-GAGCTCATCGGCATGAACTCGACGCTCATGTGCC 1373712 Query 65375 AGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG-GTGCCACCCATTTGG 65433 ||||||| |||| ||| | || || || || || | |||| ||||| | | Sbjct 1373711 AGTACATCGAGTTCGTGGCCGACCGCCTGCT-GTACTCGCTGGGCGTGCCCAAGCTCTAC 1373653 Query 65434 AACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTC 65493 |||| ||||| || || |||| ||||| | || || | || |||||||||||| Sbjct 1373652 AACGTCAAGAACCCCTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTC 1373593 Query 65494 TTTGAGAAGCGAGTTGGGGACTA 65516 || |||||||| || || || || Sbjct 1373592 TTCGAGAAGCGTGTGGGCGAGTA 1373570 >seq18 Length=670814 Score = 91.5 bits (100), Expect = 2e-13 Identities = 330/503 (66%), Gaps = 14/503 (3%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAG-TCTCGCTCCTTCGCCGAG 65079 ||||||||||| | ||||| | || |||| ||| | | | ||| || | | | ||| Sbjct 7751 AGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGGGTGTCG-TCGTACCCGGAG 7809 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 || || | ||||| || || || || ||||||||||| || || |||||| | || Sbjct 7810 CGTCTGCTGGCGTTCGCTGCGGTTGAAGGCATCTTCTTCTCGGGCTCCTTCTGCTCCATC 7869 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | ||| | |||||||| || |||||||| ||||| ||||||| || || || || | Sbjct 7870 TTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGAGCTTCTCCAACGAGCTCATCAGC 7929 Query 65200 CGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAGA 65259 || | ||||| | ||| ||| || | |||| ||| | | | || | | | Sbjct 7930 CGCAACGAGGGCATGCACACGGACTTCG-CGTG--CCTCATGTACTCCAAGC-TGGTCAA 7985 Query 65260 CCCACT-ACCGAAA---CTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGG 65315 | ||| |||| | | |||| ||||| ||||| || || ||| | | Sbjct 7986 CAAACTGCCCGAGAGCCGCGTGCACGAAATCGTTCGTGAGGCCGTCACCATCGAGCACGA 8045 Query 65316 GTTCATCTTGGACGCACT-CCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCG 65374 |||| | | ||| | || ||| || | |||||||| |||||||| | |||| | Sbjct 8046 GTTCGTGTGCGACTCGCTGCCCGTG-GAGCTCATCGGCATGAACTCGACGCTCATGTGCC 8104 Query 65375 AGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG-GTGCCACCCATTTGG 65433 ||||||| |||| ||| | || || || || || | |||| ||||| | | Sbjct 8105 AGTACATCGAGTTCGTGGCCGACCGCCTGCT-GTACTCGCTGGGCGTGCCCAAGCTCTAC 8163 Query 65434 AACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTC 65493 |||| ||||| || || |||| ||||| | || || | || |||||||||||| Sbjct 8164 AACGTCAAGAACCCCTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTC 8223 Query 65494 TTTGAGAAGCGAGTTGGGGACTA 65516 || |||||||| || || || || Sbjct 8224 TTCGAGAAGCGTGTGGGCGAGTA 8246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568988516160