Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4 154 4e-32 seq1 100 8e-16 >seq4 Length=7609242 Score = 154 bits (170), Expect = 4e-32 Identities = 253/359 (70%), Gaps = 12/359 (3%) Strand=Plus/Minus Query 302491 TCAATTCCGTCATCGCCGTA--GGAATACTGAATGATTTTGTTCTTGTT-ATTTCTTACG 302547 || || ||||| || ||||| |||| ||| || || | | |||| ||||| ||| Sbjct 926124 TCCATACCGTCTTCACCGTACAGGAA--CTGGATAATCTCGC-CTTGCGCATTTCGGACG 926068 Query 302548 GTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAA 302607 || ||| |||| |||||| ||||| ||| | | ||| |||||||| ||| Sbjct 926067 GTACCATCGTAACGCGTCATAACCGACTCCATTGCCTTCACCAGACGGCGCTGAATGTAA 926008 Query 302608 CCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGG 302667 ||||| | || || ||||| |||||||||||||| ||||||||||||| || ||| Sbjct 926007 CCAGTCTCGGCCGTCTTCACAGCCGTATCAATTAGACCTTCACGACCACCCATGGCGTGG 925948 Query 302668 AAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCC 302727 ||||| | |||| ||| | ||| | | ||| |||| ||||||||||| Sbjct 925947 AAGAAGAATTCTTGAGGTGTCAAACCCTTCAGGTACGAGTTCTCCACGAAACCACGACTT 925888 Query 302728 TCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTAT 302784 ||||| | ||||||| |||| |||| |||| || | | | ||||||| Sbjct 925887 TCGGGGCCCAAATCGTC---CTTGCCGTAGTGCGGCAACGTACGATGGTTGAAGCCGTAC 925831 Query 302785 GGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||||||||||| |||||||||||||| |||| ||| | ||| |||||||| ||||| Sbjct 925830 GGGATACGCTTTCCTTCAACGTTCTGCTGGCCCACGCAAGCAATAATCTGCGAGATATT 925772 >seq1 Length=13391543 Score = 100 bits (110), Expect = 8e-16 Identities = 145/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | || || || ||||||||||| || || ||| | || || || ||||| Sbjct 6652490 CTTGATGGCCGAAGCAAGGGCGCCAAGCGAGTCGCGATCAAGGTAGTTCGTCGGCTCGTC 6652549 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 ||| | || | |||||| | || |||||| || |||||||| || ||||| |||||||| Sbjct 6652550 AAGCACCAGGATGTGCGGGTTCAGCCACATAGCAGCAGCCAGCACGACCTTCACCTTCTG 6652609 Query 354123 TCCGCCTGATAGTGCGTGAATCTTGGAATATGTACCGAACT--GCGATTCAAGGTTGAAA 354180 ||||| || || | | || || | |||||||||| ||| ||| ||| ||| Sbjct 6652610 ACCGCCGGACAGACCACGCATGCGCGAGTGGGTACCGAACTCGGCG-TTC-AGGCCGAAG 6652667 Query 354181 TGGTCGAGATGTTTCTGTACG 354201 | ||| || || ||||| ||| Sbjct 6652668 TTGTCCAGGTGCTTCTGCACG 6652688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816053671634