Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq7 145 7e-30 seq2 114 1e-20 seq6 82.4 7e-11 >seq7 Length=4006126 Score = 145 bits (160), Expect = 7e-30 Identities = 404/611 (66%), Gaps = 13/611 (2%) Strand=Plus/Plus Query 139389 GCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATC 139448 ||| || |||| || | | ||||||||||||| || | ||||| ||| | | || || Sbjct 2440112 GCCATTGGCCTCCACCCTCTTCATGAACAGATCGGGCACCCACAGCGCGTAGAACAGGTC 2440171 Query 139449 GCGCGCCTTCTT-ATCTTCCGAACCCATGTTACGTTT-CATGTTAAGGAAATCAAAAACG 139506 |||||| | | || || || || | | | || || ||||| || || ||| Sbjct 2440172 GCGCGCGCGGTGCAGCT--CGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACG 2440229 Query 139507 TCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCACCT---TGA 139563 || |||||||| || || || |||||||| | | ||| || || ||||| || || Sbjct 2440230 TCCGCGTGCCAGGGCTCAAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCTCCGCCCTGG 2440289 Query 139564 TCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTT 139623 || |||| || | | | ||||| ||||||| ||| || | || | | | Sbjct 2440290 TCCACGTAGCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCATTGGACGAG 2440349 Query 139624 CCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACAT--TGATGCCGA 139681 ||||| |||| ||||||| || || || |||| || ||| ||| ||||||||| Sbjct 2440350 CCGTTCGTGCCACGGATGTAGCTATTCGTGGCGCGGATGT--TGTGCATGCTGATGCCGA 2440407 Query 139682 TTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAAT-GTCTCGTATATACCTCTT 139740 | || ||| | | || || || | |||| | || | | || ||||| || || Sbjct 2440408 TACCTCCGGCCCACTTAGAGATGCACGCGCACT-GCTTGAGCGTGTCGTAGATGCCCTCA 2440466 Query 139741 ATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCG 139800 ||| |||||||||||| | | ||| ||||| ||||| ||||| || | ||||||| Sbjct 2440467 ATGGAGTCGTCCTGCATGGCCAACAGGAAGCAGGACGACAGTTGTGGGCGCGGCGTGCCG 2440526 Query 139801 GCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTT 139860 || |||||| || || ||||||||||||| | | || |||||| | |||||||| Sbjct 2440527 GCGTTAAACAGTGTCGGGGTCGCGTGCGTGAAAAACTTTTGCGACATGAGCTCGTACGTC 2440586 Query 139861 TCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGT 139920 |||| |||| | ||| || || |||||| || | | || ||||| | ||| || Sbjct 2440587 TCGAGGGCGGCCTTAATGTCGCTCTTGTGGATGCCCAGCGCCACGCGCATAATCATCTGC 2440646 Query 139921 TGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTTG 139980 || || || ||||| ||| | | || || ||| ||| || |||||| Sbjct 2440647 TGCGGGCGCTCCACCACCTTGCCGTTCACGCGGAAGAGGTAGCCGCGCTCGAGCGTCTTG 2440706 Query 139981 TAGCCAAAGTA 139991 |||||||||| Sbjct 2440707 AAGCCAAAGTA 2440717 >seq2 Length=11587142 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || ||||| || || || | | Sbjct 4539019 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 4538960 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||| ||||| ||||| || || || || || Sbjct 4538959 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 4538900 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || ||||||||||| | | || || || ||| Sbjct 4538899 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 4538840 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| ||||| |||| |||| || ||| Sbjct 4538839 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 4538792 Score = 111 bits (122), Expect = 1e-19 Identities = 179/255 (70%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || ||||| || || || | | Sbjct 4538563 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 4538504 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||| ||||| ||||| || || || || || Sbjct 4538503 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 4538444 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || ||||||||||| | | || || || ||| Sbjct 4538443 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 4538384 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCCA 24943 || || ||||| ||||| || ||| ||||| |||| |||| || ||| |||| || | Sbjct 4538383 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGTGGTGGC--AACTAAGTCG 4538326 Query 24944 ACGAAAGACGTCGAC 24958 | || ||||| ||| Sbjct 4538325 TC-AACGACGTGGAC 4538312 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || ||||| || || || | | Sbjct 4539248 GATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTC 4539189 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || ||||||||||| ||||| ||||| || || || || || Sbjct 4539188 GGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCA 4539129 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||| ||||| || ||||||||||| | | || || || || Sbjct 4539128 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 4539069 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| ||||| || ||| ||||| |||| |||| || ||| Sbjct 4539068 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 4539020 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || ||||| || || || | | Sbjct 4538791 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 4538732 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||| ||||| ||||| || || || || || Sbjct 4538731 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 4538672 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || ||||||||||| | | || || || ||| Sbjct 4538671 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 4538612 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| ||||| |||| |||| || ||| Sbjct 4538611 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 4538564 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || ||||| || || || | | Sbjct 3716038 GATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACGATCACGCTGGACGTGGAGCCGTC 3716097 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || ||||||||||| ||||| || || || || || || || Sbjct 3716098 GGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 3716157 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| ||||| || ||||| ||||| | | || || || || Sbjct 3716158 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTACAA 3716217 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| ||||| || ||| ||||| |||| |||| || ||| Sbjct 3716218 CATCCAGAAGGAGTCGACTCTCCACCTGGTGCTGCGTCTGCGTGGTGGC 3716266 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || ||||| || || || | | Sbjct 3716267 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 3716326 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||| ||||| || || || || || || || Sbjct 3716327 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 3716386 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || ||||| ||||| | | || || || ||| Sbjct 3716387 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTACAAC 3716446 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| ||||| |||| |||| || ||| Sbjct 3716447 ATCCAGAAGGAGTCGACTCTCCACCTGGTGCTGCGTCTGCGTGGTGGC 3716494 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || ||||| || || || | | Sbjct 3716495 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 3716554 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||| ||||| || || || || || || || Sbjct 3716555 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 3716614 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || ||||| ||||| | | || || || ||| Sbjct 3716615 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTACAAC 3716674 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||| ||||| | || | ||||| || Sbjct 3716675 ATCCAGAAGGAGTCGACTCTCCACCTGGTGCTTCGCCTTCGCGGTGG 3716721 >seq6 Length=4785000 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || || || | || Sbjct 2506858 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 2506799 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| || || || || || || || Sbjct 2506798 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 2506739 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || ||||||| ||||| || ||||| ||||| Sbjct 2506738 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGA 2506704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897138854960