Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq80 84.2 3e-11 seq23 84.2 3e-11 seq16 84.2 3e-11 >seq80 Length=2145 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 8660 CTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCC 8719 ||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| |||||| Sbjct 14 CTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATTCCC 73 Query 8720 CGACGAGGAGC 8730 |||| | ||| Sbjct 74 GGACGGGAAGC 84 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 8660 CTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCC 8719 ||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| |||||| Sbjct 577 CTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATTCCC 636 Query 8720 CGACGAGGAGC 8730 |||| | ||| Sbjct 637 GGACGGGAAGC 647 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 8660 CTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCC 8719 ||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| |||||| Sbjct 1138 CTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATTCCC 1197 Query 8720 CGACGAGGAGC 8730 |||| | ||| Sbjct 1198 GGACGGGAAGC 1208 >seq23 Length=187360 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 8660 CTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCC 8719 ||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| |||||| Sbjct 99604 CTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATTCCC 99545 Query 8720 CGACGAGGAGC 8730 |||| | ||| Sbjct 99544 GGACGGGAAGC 99534 >seq16 Length=803425 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 8660 CTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCC 8719 ||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| |||||| Sbjct 594 CTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATTCCC 535 Query 8720 CGACGAGGAGC 8730 |||| | ||| Sbjct 534 GGACGGGAAGC 524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652844130834080