Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2 105 2e-17 seq7 98.7 2e-15 >seq2 Length=11587142 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||||| || || || |||||||| |||| ||||| || ||| Sbjct 4539016 CAGATCTTCGTCAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 4538957 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||||||||| || || || ||||| || ||| ||| || Sbjct 4538956 TCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 4538897 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || ||| |||||| || Sbjct 4538896 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 4538837 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 4538836 CAGAAGGAGTCGACGCTGCACCTGGT 4538811 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || |||||||| |||| ||||| || ||| Sbjct 4538560 CAGATCTTCGTCAAGACCCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 4538501 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||||||||| || || || ||||| || ||| ||| || Sbjct 4538500 TCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 4538441 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || ||| |||||| || Sbjct 4538440 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 4538381 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 4538380 CAGAAGGAGTCGACGCTGCACCTGGT 4538355 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || |||||||| |||| ||||| || ||| Sbjct 4538788 CAGATCTTCGTCAAGACCCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 4538729 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||||||||| || || || ||||| || ||| ||| || Sbjct 4538728 TCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 4538669 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || ||| |||||| || Sbjct 4538668 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 4538609 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 4538608 CAGAAGGAGTCGACGCTGCACCTGGT 4538583 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || |||||||| |||| ||||| || ||| Sbjct 4539244 CAGATCTTCGTCAAGACCCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 4539185 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||||||||| || || || ||||| || ||| ||| || Sbjct 4539184 TCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 4539125 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || ||| |||||| || Sbjct 4539124 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 4539065 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 4539064 CAGAAGGAGTCGACGCTGCACCTGGT 4539039 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| || ||| | |||| Sbjct 3716054 AAGACCCTGACTGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGACTCGATCGACAAC 3716113 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||||||||| || || || || || || ||| ||| || | || |||||| Sbjct 3716114 GTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATCTTC 3716173 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | || || ||| |||||| ||||||| ||||| Sbjct 3716174 GCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCG 3716233 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 3716234 ACTCTCCACCTGGT 3716247 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| || ||| | |||| Sbjct 3716282 AAGACCCTGACTGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGACTCGATCGACAAC 3716341 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||||||||| || || || || || || ||| ||| || | || |||||| Sbjct 3716342 GTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATCTTC 3716401 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | || || ||| |||||| ||||||| ||||| Sbjct 3716402 GCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCG 3716461 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 3716462 ACTCTCCACCTGGT 3716475 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| || ||| | |||| Sbjct 3716510 AAGACCCTGACTGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGACTCGATCGACAAC 3716569 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||||||||| || || || || || || ||| ||| || | || |||||| Sbjct 3716570 GTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATCTTC 3716629 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | || || ||| |||||| ||||||| ||||| Sbjct 3716630 GCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCG 3716689 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 3716690 ACTCTCCACCTGGT 3716703 >seq7 Length=4006126 Score = 98.7 bits (108), Expect = 2e-15 Identities = 170/247 (69%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166 ||||||||||||| |||||||||| || ||| || || ||| ||| | | Sbjct 2439921 GCGTCCTTGTAGAGCATGAAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAAC 2439980 Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 173226 || || | || || || | || | | ||| | ||| || || ||||| | ||||| Sbjct 2439981 CACAGCTGCTGCGCGTTGATCGTCTTGCGCGCGCGTCCCTCCTTCTCGTACTTTTCATAA 2440040 Query 173227 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 173286 ||| || || |||| || | |||| || || |||||||| || || || || Sbjct 2440041 AGGGTCTCAAACTCCTCGCCCCAGCACTCGTAGAGCCCAGGAGCTTCATTGGGGCAGAAC 2440100 Query 173287 AGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGCG 173346 |||||||| || |||| || ||| |||||||||||||| || |||| ||| | |||| Sbjct 2440101 AGACTCCACTTGCCATTGGCCTCCACCCTCTTCATGAACAGATCGGGCACCCACAGCGCG 2440160 Query 173347 TAGAACA 173353 ||||||| Sbjct 2440161 TAGAACA 2440167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181819558349522