Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq7 233 2e-56 seq2 105 6e-18 >seq7 Length=4006126 Score = 233 bits (258), Expect = 2e-56 Identities = 978/1524 (64%), Gaps = 40/1524 (3%) Strand=Plus/Plus Query 146905 AACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCA 146964 |||||||| |||||||| || | | |||| ||| ||| | ||||| | ||||| Sbjct 2439249 AACTCGCCGGCCAGCACGCGGCGGTTGTACATGTTGGACGTGTACGGCTCGATGGACTCG 2439308 Query 146965 TTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTT 147024 || ||||| | || |||||||| | || || |||||| ||||||| || || || Sbjct 2439309 TTGTTGCCGAGGATCTGGGCCGTCGAGGCAGTGGGCATGGGGGCCACCAGCAGCGAGTTG 2439368 Query 147025 CGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACAT---CGACGAG 147081 ||||| |||| | | ||| ||||||| | ||||| ||||| |||||| Sbjct 2439369 CGCAGGCCGTGCTTGATCACGTTCTCCTTCAGCGCCGCCCAGTTCCACAGGTCCGACGAC 2439428 Query 147082 GGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAAC 147141 || || ||| |||||||||| |||||| | || ||||| || ||| |||| Sbjct 2439429 GGGGTGACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTGGCCGGCGAGCCCTGGAAC 2439488 Query 147142 GTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTAT 147201 || ||| ||| || || | || | | ||| | ||| ||||||| Sbjct 2439489 GTCTCGTACGGGCCGAGCTCCTTGGCGATCTCCATGGACGTCTCCATGGCTGCATAGTAG 2439548 Query 147202 ATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGC 147261 ||||| ||| ||| | ||||| || || || || ||||||||| | | | | Sbjct 2439549 ATGGTCTCGAAGATCTTCTTGTTGAGCTCGCGGGCCTCCTCGCTCTCGAACGCGAAGTTC 2439608 Query 147262 AGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCG 147321 | || | || || || || | ||||||| |||| |||||| || || || || Sbjct 2439609 ATGAGGATGAACGCGTCCGCGAGGCCCTGGACGCCGATGCCGATGGGGCGGTGA----CG 2439664 Query 147322 T-TGCTGCGCTT-CGCGC-TCG-CTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAG 147377 || || ||| ||||| ||| | | ||| |||| |||| || || | |||||| || Sbjct 2439665 CATGTTGGACTTGCGCGCCTCGGCCACGGGGTAGTAGTTGACGTCGATGACCTTGTTCAG 2439724 Query 147378 GTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTC 147437 ||| ||| | || || || | | ||| |||| | | || | || || || Sbjct 2439725 GTTGCGCGTGATGACCTTGGTGACCTCGTAGAGCTTCTGGTAGTCGAACACGCCCTCCTC 2439784 Query 147438 GACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGC 147497 ||| || |||| || || | || ||||| ||||| |||||| ||| |||| Sbjct 2439785 CACAA--AC---TTGGG-CAGCGCCACCGAGGCCAGGTTGCACACGGCCACCTCGTCGGG 2439838 Query 147498 GTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTG 147557 | |||||| || | ||| ||||| ||||||| | || || | || || Sbjct 2439839 GGACGTGTACTCCATCACCTCGCAGCACAAGTTGCTGGAGCGGATCGTACCGAGGTTCTG 2439898 Query 147558 CTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGAC 147617 ||| || ||||| ||| |||||| ||| |||||||| | || |||| ||||||| Sbjct 2439899 CTGGTTCGACTTCCGGTTGGCCGCGTCCTTGTAGAGCATGAAGGGCACGCCCGTCTCGAT 2439958 Query 147618 TTGCGTTTCAACGATA---AACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCG 147674 |||| || | ||| |||| ||| | |||||| | | || || ||| Sbjct 2439959 CTGCGCGTCCAGGATGGCGAACCA---CAGCTGCTGCGCGTTGATCGTCTTGCGCGCGCG 2440015 Query 147675 GCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAG 147734 ||||| || |||||| || || | ||||||||| ||||| |||| ||| || Sbjct 2440016 TCCCTCCTTCTCGTACTTTTCATAAAGGGTCTCAAACTCCTCGCCCCAGCACTCGTAGAG 2440075 Query 147735 GCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCAT 147794 || ||| | || || || | ||| |||| || | | || | || | ||| Sbjct 2440076 CCCAGGAGCTTCATTGGGGCAGAACAGACTCCACTTGCCATTGGCCTCCACCCTCTTCAT 2440135 Query 147795 AAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTT--TGCAA-TCCTCGGC 147851 |||||||| ||||||||||||||||| | || |||||||| |||| || | | | Sbjct 2440136 GAACAGATCGGGCACCCACAGCGCGTAGAACAGGTCGCGCGCGCGGTGCAGCTCGTTGCC 2440195 Query 147852 GCCCATGTTGCGTTTCAAATTAAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAATGT 147910 | | ||||| || | || | | | | | | ||| ||||||||||| |||| || Sbjct 2440196 GTGGTTCTTGCG---CAGGTCCAGGAACTCGA-ACACGTCCGCGTGCCAGGGCTCAAGGT 2440251 Query 147911 AGACGGCCAGCGCACCTTTACGCTT---TCCGCCCTGGTCGACATGGCGCACCATGTTGT 147967 ||| ||| | || || || ||||| |||||||||||| || | ||| || ||| || Sbjct 2440252 AGATGGCGAACGAGCCCTTGCGCTTGCCTCCGCCCTGGTCCACGTAGCGGGCCGTGTCGT 2440311 Query 147968 TAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGC 148027 | |||||||||| |||||| | ||| | | | |||||| ||| | ||| | || Sbjct 2440312 TGAACACGCGCAGCATGGGGATGATGCCATTGGACGAGCCGTTCGTGCCACGGATGTAGC 2440371 Query 148028 TGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGG 148087 | ||| || | | ||||| | | | ||| || || ||| | |||| || ||| Sbjct 2440372 TATTCGTGGCGCGGATGTTGTGCATGCTGATGCCGATACCTCCGGCCCACTTAGAGATGC 2440431 Query 148088 CAGCGCAATCGCCCAA---TGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAA 148144 ||||| | || | |||||| ||||||| || ||| ||||| | | | | | Sbjct 2440432 ACGCGCACT-GCTTGAGCGTGTCGT--AGATGCCCTCAATGGAGTCGTCCTGCATGGCCA 2440488 Query 148145 GCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCG 148204 || || || || ||| ||| || | |||| || || || || || || ||| Sbjct 2440489 ACAGGAAGCAGGACGACAGTTGTGGGCGCGGCGTGCCGGCGTTAAACAGTGTCGGGGTCG 2440548 Query 148205 CGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGT 148264 ||||||| || || ||||| ||| | |||||||| | ||| | | |||||| Sbjct 2440549 CGTGCGTGAAAAACTTTTGCGACATGAGCTCGTACGTCTCGAGGGCGGCCTTAATGTCGC 2440608 Query 148265 CGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGAT 148324 ||| ||||||||||| |||||||| | ||| ||||| || || || | || | Sbjct 2440609 TCTTGTGGATGCCCAGCGCCACGCGCATAATCATCTGCTGCGGGCGCTCCACCACCTTGC 2440668 Query 148325 TGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAA 148384 ||| | || || || || ||||| || ||| | |||||||| | ||| || | Sbjct 2440669 CGTTCACGCGGAAGAGGTAGCCGCGCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCGA 2440728 Query 148385 AATCTAGCTCGTAAGCGATGGCCG 148408 | || | |||| |||||||| Sbjct 2440729 AGTCGCGGTCGTGGATGATGGCCG 2440752 >seq2 Length=11587142 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 3716488 ACGCAGACGCAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 3716429 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || |||||||| || |||| |||| |||||||| || || || || ||||| Sbjct 3716428 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 3716369 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || ||||| || | | || | | || | ||||||||| || | Sbjct 3716368 CTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 3716309 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | ||| || |||||||| || || | ||| ||||||||| Sbjct 3716308 CGTGATCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 3716266 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 3716260 ACGCAGACGCAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 3716201 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || |||||||| || |||| |||| |||||||| || || || || ||||| Sbjct 3716200 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 3716141 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || ||||| || | | || | | || | ||||||||| || | Sbjct 3716140 CTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 3716081 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | ||| || |||||||| || || | ||| |||||||| Sbjct 3716080 CGTGATCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3716039 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||||| || || || |||||||| || |||| Sbjct 3716688 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 3716629 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || ||||| || || || || ||||| || | Sbjct 3716628 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACG 3716569 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || |||||||| || || Sbjct 3716568 TTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTC 3716509 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 3716508 ACGAAGATCTGCATG 3716494 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 4538342 ACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 4538401 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| || ||||| || || || || ||||| Sbjct 4538402 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCC 4538461 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || ||||| || | | || | | || | ||||||||| || | Sbjct 4538462 TTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 4538521 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | ||| || || ||||| || || | ||| ||||||||| Sbjct 4538522 CGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 4538564 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 4538570 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 4538629 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| || ||||| || || || || ||||| Sbjct 4538630 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCC 4538689 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || ||||| || | | || | | || | ||||||||| || | Sbjct 4538690 TTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 4538749 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | ||| || || ||||| || || | ||| ||||||||| Sbjct 4538750 CGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 4538792 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 4538798 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 4538857 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| || ||||| || || || || ||||| Sbjct 4538858 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCC 4538917 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || ||||| || | | || | | || | ||||||||| || | Sbjct 4538918 TTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 4538977 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | ||| || || ||||| || || | ||| ||||||||| Sbjct 4538978 CGTGATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 4539020 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 4539026 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 4539085 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| || ||||| || || || || ||||| Sbjct 4539086 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCC 4539145 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || ||||| || | | || | | || | ||||||||| || | Sbjct 4539146 TTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 4539205 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | ||| || || ||||| || || | ||| |||||||| Sbjct 4539206 CGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 4539247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610711473520