Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 102 1e-16 >seq1 Length=13391543 Score = 102 bits (112), Expect = 1e-16 Identities = 364/562 (65%), Gaps = 9/562 (2%) Strand=Plus/Minus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| | ||| |||||||| || | ||||||||| | || || | ||||| || | Sbjct 5642153 ACATGAGGCAAGCGAAGTCCGTGTGCATGCCCTCATCGCGGCTGATCAGCTCGTTCGAGA 5642094 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA-GATCCA 39727 | | || |||||||| || || ||||| |||||||| || |||| |||| || || || Sbjct 5642093 AGCTCAGACCAGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAACGAGCCC 5642035 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG-TATC 39786 || ||||||||||| || || || || || || | || | ||| ||| | | | Sbjct 5642034 GAGAAGAAGATGCCCTCCACAGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACC 5641975 Query 39787 ATTATGT--ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 || |||||| | ||||| | ||||||||||| ||||| || || || || Sbjct 5641974 CGCGGGTCGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTGACACACGGGATCGTCTCG 5641915 Query 39845 ATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGA 39904 || || | || | | || || | || || | || || || || | ||| Sbjct 5641914 ATGGCTCGCAGCAGGTGGTCCTTCTCCACCGCGTCCTTGATGTACGTGTCGATGAGCAGC 5641855 Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 |||| || || |||||||| || || || ||||| || ||||| || || | || Sbjct 5641854 GAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGCGCC 5641795 Query 39965 TCAGTAATTTGTACCTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCAT 40022 || | | || ||||| || || || | |||| || || ||||| || || | Sbjct 5641794 TCCGGCACCTGCACCTCATTGCTGAAGTTCAT--GGCCAGGTTCTCGTTCACGATGCCGT 5641737 Query 40023 CACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT 40082 | || || || || || |||| || || || || || | || | | |||| | Sbjct 5641736 CGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGT 5641677 Query 40083 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCT 40142 | |||||| |||| || | | || | || || || ||||| |||||||||| Sbjct 5641676 TCGCCCAGTCCTTGAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGACGCCT 5641617 Query 40143 CTGCCTTTTTGTACATGTTCCA 40164 | ||||| |||||||| | ||| Sbjct 5641616 CCGCCTTCTTGTACATCTGCCA 5641595 Score = 102 bits (112), Expect = 1e-16 Identities = 364/562 (65%), Gaps = 9/562 (2%) Strand=Plus/Plus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| | ||| |||||||| || | ||||||||| | || || | ||||| || | Sbjct 5643807 ACATGAGGCAAGCGAAGTCCGTGTGCATGCCCTCATCGCGGCTGATCAGCTCGTTCGAGA 5643866 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA-GATCCA 39727 | | || |||||||| || || ||||| |||||||| || |||| |||| || || || Sbjct 5643867 AGCTCAGACCAGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAACGAGCCC 5643925 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG-TATC 39786 || ||||||||||| || || || || || || | || | ||| ||| | | | Sbjct 5643926 GAGAAGAAGATGCCCTCCACAGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACC 5643985 Query 39787 ATTATGT--ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 || |||||| | ||||| | ||||||||||| ||||| || || || || Sbjct 5643986 CGCGGGTCGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTGACACACGGGATCGTCTCG 5644045 Query 39845 ATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGA 39904 || || | || | | || || | || || | || || || || | ||| Sbjct 5644046 ATGGCTCGCAGCAGGTGGTCCTTCTCCACCGCGTCCTTGATGTACGTGTCGATGAGCAGC 5644105 Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 |||| || || |||||||| || || || ||||| || ||||| || || | || Sbjct 5644106 GAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGCGCC 5644165 Query 39965 TCAGTAATTTGTACCTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCAT 40022 || | | || ||||| || || || | |||| || || ||||| || || | Sbjct 5644166 TCCGGCACCTGCACCTCATTGCTGAAGTTCAT--GGCCAGGTTCTCGTTCACGATGCCGT 5644223 Query 40023 CACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT 40082 | || || || || || |||| || || || || || | || | | |||| | Sbjct 5644224 CGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGT 5644283 Query 40083 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCT 40142 | |||||| |||| || | | || | || || || ||||| |||||||||| Sbjct 5644284 TCGCCCAGTCCTTGAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGACGCCT 5644343 Query 40143 CTGCCTTTTTGTACATGTTCCA 40164 | ||||| |||||||| | ||| Sbjct 5644344 CCGCCTTCTTGTACATCTGCCA 5644365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908095918480