Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq7 208 9e-49 seq1 120 4e-22 seq5 114 2e-20 seq18 109 6e-19 seq4 82.4 9e-11 >seq7 Length=4006126 Score = 208 bits (230), Expect = 9e-49 Identities = 439/646 (68%), Gaps = 9/646 (1%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| | ||| | ||||||||||| | || || || | |||||| | | | Sbjct 2440652 CCCGCAGCAGATGATTATGCGCGTGGCGCTGGGCATCCACAAGAGCGACATTAAGGCCGC 2440593 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | | ||||| ||||| ||||| ||| | |||| ||||| || || || || || Sbjct 2440592 CCTCGAGACGTACGAGCTCATGTCGCAAAAGTTTTTCACGCACGCGACCCCGACACTGTT 2440533 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 || || || || || | || ||| |||| |||||||| | |||| |||| || Sbjct 2440532 TAACGCCGGCACGCCGCGCCCACAACTGTCGTCCTGCTTCCTGTTGGCCATGCAGGACGA 2440473 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| || | || ||||| | || || | | |||| ||| ||||| |||||||| || Sbjct 2440472 CTCCATTGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCTAAGTGGGCCGG 2440413 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAA 104519 ||||| || || ||| || | | | |||| || | || || || || || | Sbjct 2440412 AGGTATCGGCATCAGCATGCACAACATCCGCGCCACGAATAGCTAC-ATCCGTGGCACGA 2440354 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || |||| || || || ||||| ||||| || |||| ||| || ||||| | Sbjct 2440353 ACGGCTCGTCCAATGGCATCATCCCCATGCTGCGCGTGTTCAACGACACGGCCCGCTACG 2440294 Query 104580 TAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | | || | || | || ||||| || |||| |||| |||||||| ||||||| Sbjct 2440293 TGGACCAGGGCGGAGGCAAGCGCAAGGGCTCGTTCGCCATCTACCTTGAGCCCTGGCACG 2440234 Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC- 104695 |||| | | |||||||| || |||| ||||| || ||||| | | | | || Sbjct 2440233 CGGACGTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAACGAGCTG-CACCGCGCG 2440175 Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 ||||| || |||| ||| || ||| | || ||||| ||||||||||| || |||| | | Sbjct 2440174 CGCGACCTGTTCTACGCGCTGTGGGTGCCCGATCTGTTCATGAAGAGGGTGGAGGCCAAT 2440115 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGA 104814 ||||| ||| ||| || || || | | || ||||| |||| ||| ||| | ||| || Sbjct 2440114 GGCAAGTGGAGTCTGTTCTGCCCCAATGAAGCTCCTGGGCTCTACGAGTGCTG-GGGCGA 2440056 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCG 104860 ||||||||| ||||||| |||||||||| | || || || ||| Sbjct 2440055 GGAGTTTGAGACCCTTTATGAAAAGTACGAGAAGGAGGGACGCGCG 2440010 >seq1 Length=13391543 Score = 120 bits (132), Expect = 4e-22 Identities = 190/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||| | | |||||| | || || | ||||||| | Sbjct 5641859 CTCATCGACACGTACATCAAGGACGCGGTGGAGAAGGACCACCTGCTGCGAGCCATCGAG 5641918 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG--- 94788 || | |||||| | | ||||||||| | ||||| | ||||||| || | | Sbjct 5641919 ACGATCCCGTGTGTCAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGGGTG 5641978 Query 94789 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 ||| ||| || | ||||| || | || || || ||| ||||| ||||||||||| Sbjct 5641979 TCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCTGCTGTGGAGGGCATCTTCTTCTC 5642034 Query 94848 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 || || |||||| | || | |||||||||||||| || || ||||| ||||| |||| Sbjct 5642035 GGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCTGGTCTGAGCTT 5642094 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| |||||||| ||| || || ||||| Sbjct 5642095 CTCGAACGAGCTGATCAGCCGCGATGAGGG 5642124 Score = 120 bits (132), Expect = 4e-22 Identities = 190/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||| | | |||||| | || || | ||||||| | Sbjct 5644101 CTCATCGACACGTACATCAAGGACGCGGTGGAGAAGGACCACCTGCTGCGAGCCATCGAG 5644042 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG--- 94788 || | |||||| | | ||||||||| | ||||| | ||||||| || | | Sbjct 5644041 ACGATCCCGTGTGTCAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGGGTG 5643982 Query 94789 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 ||| ||| || | ||||| || | || || || ||| ||||| ||||||||||| Sbjct 5643981 TCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCTGCTGTGGAGGGCATCTTCTTCTC 5643926 Query 94848 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 || || |||||| | || | |||||||||||||| || || ||||| ||||| |||| Sbjct 5643925 GGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCTGGTCTGAGCTT 5643866 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| |||||||| ||| || || ||||| Sbjct 5643865 CTCGAACGAGCTGATCAGCCGCGATGAGGG 5643836 >seq5 Length=6830280 Score = 114 bits (126), Expect = 2e-20 Identities = 191/272 (70%), Gaps = 12/272 (4%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGAT--GGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCC 94729 ||||| |||| ||| || |||||| | || |||||||| || || || || || Sbjct 1397343 CTCATCGACACGTACATCAAGGATACGATG--GAGAAGAACCACCTGTTGCGCGCTATTG 1397400 Query 94730 AAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG- 94788 | || | ||||| | | ||||| ||| | ||||| | ||||||| || | | Sbjct 1397401 AGACGATCCCGTGCGTCAAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGGG 1397460 Query 94789 --TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTC 94845 ||| ||| || | ||||| || | || || || ||||| || ||||||||| Sbjct 1397461 TGTCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCTGCGGTTGAAGGCATCTTCTTC 1397516 Query 94846 TCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC 94905 || || ||||||||| | || | |||||||||||||| || |||||||| || || || Sbjct 1397517 TCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGAGC 1397576 Query 94906 TTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||||||||| ||| || |||||||| Sbjct 1397577 TTCTCCAACGAGCTCATCAGCCGCGACGAGGG 1397608 Score = 109 bits (120), Expect = 6e-19 Identities = 190/272 (70%), Gaps = 12/272 (4%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGAT--GGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCC 94729 ||||| |||| ||| || |||||| | || |||||||| || || || || || Sbjct 1374141 CTCATCGACACGTACATCAAGGATACGATG--GAGAAGAACCACCTGTTGCGCGCTATTG 1374084 Query 94730 AAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG- 94788 | || | ||||| | | ||||| ||| | ||||| | ||||||| || | | Sbjct 1374083 AGACGATCCCGTGCGTCAAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGGG 1374024 Query 94789 --TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTC 94845 ||| ||| || | ||||| || | || || || ||||| || ||||||||| Sbjct 1374023 TGTCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCTGCGGTTGAAGGCATCTTCTTC 1373968 Query 94846 TCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC 94905 || || ||||||||| | || | |||||||||||||| || |||||||| || || || Sbjct 1373967 TCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGAGC 1373908 Query 94906 TTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||||||||| ||| || ||||||| Sbjct 1373907 TTCTCCAACGAGCTCATCAGCCGCAACGAGGG 1373876 >seq18 Length=670814 Score = 109 bits (120), Expect = 6e-19 Identities = 190/272 (70%), Gaps = 12/272 (4%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGAT--GGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCC 94729 ||||| |||| ||| || |||||| | || |||||||| || || || || || Sbjct 7675 CTCATCGACACGTACATCAAGGATACGATG--GAGAAGAACCACCTGTTGCGCGCTATTG 7732 Query 94730 AAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG- 94788 | || | ||||| | | ||||| ||| | ||||| | ||||||| || | | Sbjct 7733 AGACGATCCCGTGCGTCAAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGGG 7792 Query 94789 --TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTC 94845 ||| ||| || | ||||| || | || || || ||||| || ||||||||| Sbjct 7793 TGTCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCTGCGGTTGAAGGCATCTTCTTC 7848 Query 94846 TCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC 94905 || || ||||||||| | || | |||||||||||||| || |||||||| || || || Sbjct 7849 TCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGAGC 7908 Query 94906 TTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||||||||| ||| || ||||||| Sbjct 7909 TTCTCCAACGAGCTCATCAGCCGCAACGAGGG 7940 >seq4 Length=7609242 Score = 82.4 bits (90), Expect = 9e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 169312 GAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTC-CCACGAAGAGGGAAGACAC 169370 |||||| | ||||| ||||| || |||||| ||| || || |||||||| || || | Sbjct 2139369 GAGCTGCGCGACAGTTGCATCACGCACATTCA-ACAGTTTTCCGCGAAGAGGAAACACGC 2139311 Query 169371 CGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCAC 169430 | || || || || ||||| || | || || || ||||| || | ||| || || |||| Sbjct 2139310 CATATTGGTCCCGTCCAACAACTGCAAGTCCAGCCACTGCTAGTGCCTTAGCTGAATCAC 2139251 Query 169431 CCTCGGTGACGATGAGCGTACATT 169454 ||||||| | ||| |||| |||| Sbjct 2139250 CCTCGGTCAAGATAAGCGAGCATT 2139227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260202157680