Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2 199 3e-46 >seq2 Length=11587142 Score = 199 bits (220), Expect = 3e-46 Identities = 454/676 (67%), Gaps = 19/676 (3%) Strand=Plus/Plus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| ||||| || |||| | ||| || ||||| || || || | |||| Sbjct 8407806 AGCTGCTTCTGGAGCGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACGTGG 8407865 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983 |||||||| || || | | ||| || || || |||| || ||| || | | |||| Sbjct 8407866 ACAAACTCACCAGGCTTCAACCCCGTCACCTGCGCCACCAGTCGCGTCAGCAACGCGTAG 8407925 Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043 |||||||| || || || || || || |||||||| |||| | |||||| | |||||| Sbjct 8407926 CTGGCGATATTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGACAG 8407985 Query 30044 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATG 30103 || | ||| ||||| |||||| ||||| || | ||||||||| || || ||||| Sbjct 8407986 GACAACTCGCCGTCAGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCATT 8408045 Query 30104 AGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGTTGTT 30162 | | || |||||||| || ||| | ||| || | ||| || || | || Sbjct 8408046 TCGTTGAGATCCGCCGGGTTCCACGCCGACAGCACGATCCGTCGGTCGGTCGGGTTCGTG 8408105 Query 30163 C----CTGATG-AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 30217 | || || | || | ||| ||||| ||||| ||| || |||||| Sbjct 8408106 CGCAGCTTGTGAATAACCTCCGCG------AGCTGGTCCACGCCCTGGTTCGTGTAGTCG 8408159 Query 30218 GCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCC 30277 || |||||||||||||| || || || |||| ||||||||| ||||| |||||||| Sbjct 8408160 GCATGCATGTCCGTGTACTTGGCCCCAAAGTGCCGCCACTGGAAGCCGTAGACCGGTCCG 8408219 Query 30278 AGGTCTCCCTCTTCCCTGTGCTCGAAG-CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTT 30336 || || ||| |||| | | | | | || || | |||||| | | || | || || || Sbjct 8408220 AGATCGCCCACTTCTC-GCGATTGCAGTCCACGACTGTCCAGATACTCCCGCGATCCATT 8408278 Query 30337 GGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGAC 30396 | |||||||||| | | |||||| ||| | | | ||| || |||| Sbjct 8408279 GCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCTCCACTGAT 8408338 Query 30397 GAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 ||||||||||||||||||| | ||| | ||| || || | |||||||||||| || || Sbjct 8408339 GAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGTGG 8408398 Query 30457 AAAC----TGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCG 30512 ||| |||||| | || | | ||| ||| | ||||| || |||| || | Sbjct 8408399 GAACACGTTGTCCC-TCAGACTGAACCGCATCTGCGCGCCAAAGACCGACAGCGTGCCTG 8408457 Query 30513 TGCCCGTCCTGTCTCC 30528 | ||||||| |||||| Sbjct 8408458 TTCCCGTCCGGTCTCC 8408473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406309993943544