Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq1 215 2e-51 >seq1 Length=13391543 Score = 215 bits (238), Expect = 2e-51 Identities = 405/591 (69%), Gaps = 11/591 (2%) Strand=Plus/Minus Query 66150 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCAC-GC 66208 || |||||||| ||||||||||| || || || ||| |||| ||| || || Sbjct 9083380 CGTGTGGTGGAGATCTACGGCCCCGAGAGCTCCGGCAAGACAACGCTGGCGCTGAGTTGC 9083321 Query 66209 GGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCTGCCTACATCGACGCTGAGCACTCCCT 66268 || ||| || |||||| | || || | | ||||| ||||||||| ||||| || | Sbjct 9083320 ATTGCTCAA-GCTCAGAAGACTGGCGGGACCTGTGCCTTCATCGACGCAGAGCATGCCAT 9083262 Query 66269 GGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCC 66328 ||| | | ||||||||||| || ||||| ||| | ||| ||| || ||||| Sbjct 9083261 TGACGCCCACTACGCCAAGGCTCTGGGTGTCGACATTGACGCGCTCTACGTCTCGCAGCC 9083202 Query 66329 GGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTC 66388 |||| | ||||| | || |||||||||| ||| ||| ||| ||| || | || Sbjct 9083201 GGACTCGGGCGAAGAAGCTCTGGAGATCGCCGACACGCTCATCAGGTCGGGGGCAGTGGA 9083142 Query 66389 CATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACAT 66448 | |||| || | ||| ||||||||| |||||||||||||| ||||| ||||| || || Sbjct 9083141 CCTCGTGGTGCTGGACAGTGTGGCGGCTCTGGTGCCGCGCGCGGAGCTGGAAGGTGAAAT 9083082 Query 66449 CGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCAC 66508 || ||| || | | ||||| |||||||||||| ||||| |||| ||||| || Sbjct 9083081 GGGAGACCAGCAGATTGCGCTGCAGGCGCGCCTCATGAGCCAGGCGCTGCGGAAGCTGAC 9083022 Query 66509 CGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAA 66565 || | | |||| |||| ||| | | ||| | |||||| | ||| |||| Sbjct 9083021 GGGATCGCTGTCCAAGTCCAACTGCACCATTA---TCTTCCTGAACCAGATCCGCCAGAA 9082965 Query 66566 GATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTT 66625 | | |||| | | || ||| | ||| || |||| |||| ||| || | | Sbjct 9082964 GGTGGGCATCAT---CTTCGGATCACCTGAGGTGACGTCGGGTGGCACGGCGCTGCGTTA 9082908 Query 66626 CTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGC 66685 |||||| || || || |||| | ||||||| | || ||||| ||||| ||| Sbjct 9082907 CTACGCGTCTGTGCGGCTGGACATTCGTCGCAAGACGGCCATCAAGGAGGGCGACCAGGT 9082848 Query 66686 TGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66736 |||||||||| ||| ||||||||| | |||||||||||||||| |||| Sbjct 9082847 TGTCGGCAACGAGACCGTGGTGAAGGTGGCCAAGAACAAGCTGGCCTCGCC 9082797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240959759190600