Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2 167 5e-36 seq6 136 9e-27 >seq2 Length=11587142 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || || | || || Sbjct 4538352 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 4538411 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || |||||||| || | |||||||||||| Sbjct 4538412 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 4538471 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||||| || ||||| ||||| | ||| || || || || || ||||||||| Sbjct 4538472 TGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 4538531 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 4538532 TTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 4538563 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || || | || || Sbjct 4538580 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 4538639 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || |||||||| || | |||||||||||| Sbjct 4538640 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 4538699 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||||| || ||||| ||||| | ||| || || || || || ||||||||| Sbjct 4538700 TGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 4538759 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 4538760 TTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 4538791 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || || | || || Sbjct 4538808 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 4538867 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || |||||||| || | |||||||||||| Sbjct 4538868 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 4538927 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||||| || ||||| ||||| | ||| || || || || || ||||||||| Sbjct 4538928 TGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 4538987 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 4538988 TTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 4539019 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || || | || || Sbjct 4539036 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 4539095 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || |||||||| || | |||||||||||| Sbjct 4539096 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 4539155 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||||| || ||||| ||||| | ||| || || || || || ||||||||| Sbjct 4539156 TGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 4539215 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 4539216 TTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 4539247 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || ||||| ||||| ||||| || |||||||| || || || || Sbjct 3716715 CGAAGGCGAAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 3716656 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || ||||||||||| |||||||| || || || |||||||| || | || Sbjct 3716655 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCC 3716596 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||||||||||||||| || ||||| ||||| | ||| || || || || || Sbjct 3716595 TCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGC 3716536 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| || || || ||||| || || | |||||| Sbjct 3716535 GTGATCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3716495 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||| ||||| || |||||||| || || || || | || || Sbjct 3716250 AGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 3716191 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || |||||||| || | || ||||||||| Sbjct 3716190 TCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 3716131 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||||| || ||||| ||||| | ||| || || || || || ||||||||| Sbjct 3716130 TGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 3716071 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| || || | |||||| || Sbjct 3716070 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATCTT 3716036 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||| ||||| || |||||||| || || || || | || || Sbjct 3716478 AGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 3716419 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || |||||||| || | || ||||||||| Sbjct 3716418 TCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 3716359 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||||| || ||||| ||||| | ||| || || || || || ||||||||| Sbjct 3716358 TGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 3716299 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 3716298 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3716267 >seq6 Length=4785000 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || |||| || || | || || || ||||||||||| |||||||| Sbjct 2506671 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 2506730 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || |||||||| || | || |||||||||||||| || || || || || || Sbjct 2506731 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 2506790 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||| |||| || || || || || ||||| ||||| ||||| || ||||| ||||| Sbjct 2506791 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 2506850 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 2506851 ATCTGCAT 2506858 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||| ||| || |||||||| || |||| ||| || | || || Sbjct 3467062 AGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 3467121 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 |||||||||||||| |||||||| ||||| || |||||||| || | |||| Sbjct 3467122 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATTCCT 3467172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150782165930