Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq2 132 4e-26 >seq2 Length=11587142 Score = 132 bits (146), Expect = 4e-26 Identities = 434/673 (64%), Gaps = 37/673 (5%) Strand=Plus/Plus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 ||||| || ||||||| || || ||||| ||||| || | |||||||||||| || Sbjct 8407818 AGCGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACGTGGACAAACTCACCA 8407877 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 || | | ||| || || || |||| || ||| || | | |||||||||||| || Sbjct 8407878 GGCTTCAACCCCGTCACCTGCGCCACCAGTCGCGTCAGCAACGCGTAGCTGGCGATATTG 8407937 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827 || ||||| || || |||||||| | || | |||||| | ||| || || | ||| ||| Sbjct 8407938 AACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGACAGGACAACTCGCCG 8407997 Query 29828 TCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCA------TGAGA 29878 || |||||| ||||| | ||||| |||||||| || || |||| ||||| Sbjct 8407998 TCAGCCACGTAGAACTGGCAGAACATG---TGGCACGGCGGGAGCGCCATTTCGTTGAGA 8408054 Query 29879 CCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTC-TTCTGGGTTGTTC-- 29935 || | | |||||||| || ||| | ||| || | ||| || || | || | Sbjct 8408055 TCC--GCC----GGGTTCCACGCCGACAGCACGATCCGTCGGTCGGTCGGGTTCGTGCGC 8408108 Query 29936 --CTGATG-AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNN 29992 || || | || | ||| ||||| ||||| ||| || |||||| | Sbjct 8408109 AGCTTGTGAATAACCTCCGCG------AGCTGGTCCACGCCCTGGTTCGTGTAGTCGGCA 8408162 Query 29993 NNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGG 30052 | || |||| ||||||||| ||||| |||||||| || Sbjct 8408163 TGCATGTCCGTGTACTTGGCCCCAAAGTGCCGCCACTGGAAGCCGTAGACCGGTCCGAGA 8408222 Query 30053 TCTCCCTCTTCCCTGTGCTCGAAG-CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC 30111 || ||| |||| | | | | | || || | |||||| | | || | || || ||| | Sbjct 8408223 TCGCCCACTTCTC-GCGATTGCAGTCCACGACTGTCCAGATACTCCCGCGATCCATTGCC 8408281 Query 30112 GTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAA 30171 ||||||||| | | |||||| ||| | | | ||| || |||| ||| Sbjct 8408282 GTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCTCCACTGATGAA 8408341 Query 30172 CCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30231 |||||||||||||||| | ||| | ||| || || | |||||||||||| || || || Sbjct 8408342 CCACAGCAGCTCCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGTGGGAA 8408401 Query 30232 C----TGTCCCTTGAGGCCGTACCTCGCCTGAGACCCAAACATGGACAAGACTCCCGTGC 30287 | |||||| | || | | ||| | ||| | ||||| | |||| || || | Sbjct 8408402 CACGTTGTCCC-TCAGACTGAACCGCATCTGCGCGCCAAAGACCGACAGCGTGCCTGTTC 8408460 Query 30288 CTGTCCTGTCTCC 30300 | |||| |||||| Sbjct 8408461 CCGTCCGGTCTCC 8408473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406162794090652