Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2 179 8e-40 seq6 136 8e-27 seq4 132 1e-25 seq1 113 9e-20 seq12 107 4e-18 >seq2 Length=11587142 Score = 179 bits (198), Expect = 8e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||||||| || ||||| || | ||| || || |||||||||||||| Sbjct 4538337 CCACCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 4538396 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || |||||| ||| Sbjct 4538397 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 4538456 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| ||||||||| || ||| | ||||| | |||||| | || || Sbjct 4538457 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 4538516 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||||| ||||| ||||| |||||||| Sbjct 4538517 TCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 4538563 Score = 178 bits (196), Expect = 3e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | || || || |||||||||||||| Sbjct 3716265 CCACCACGCAGACGCAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 3716206 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 3716205 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 3716146 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| ||||||||| || ||| | ||||| | |||||| | || || Sbjct 3716145 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 3716086 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || ||||||||||| || |||| ||||| ||||| |||||||| ||| Sbjct 3716085 TCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATCTTC 3716035 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | || || || |||||||||||||| Sbjct 3716493 CCACCACGCAGACGCAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 3716434 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 3716433 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 3716374 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| ||||||||| || ||| | ||||| | |||||| | || || Sbjct 3716373 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 3716314 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || |||| ||||| ||||| |||||||| Sbjct 3716313 TCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3716267 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || |||||||| ||||| || | || || || |||||||||||||| Sbjct 3716721 CCACCGCGAAGGCGAAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 3716662 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 3716661 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 3716602 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| ||||||||| || ||| | ||||| | |||||| | || || Sbjct 3716601 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 3716542 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || |||| ||||| ||||| |||||||| Sbjct 3716541 TCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3716495 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 4538565 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 4538624 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || |||||| ||| Sbjct 4538625 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 4538684 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| ||||||||| || ||| | ||||| | |||||| | || || Sbjct 4538685 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 4538744 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||||| ||||| ||||| |||||||| Sbjct 4538745 TCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 4538791 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 4538793 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 4538852 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || |||||| ||| Sbjct 4538853 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 4538912 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| ||||||||| || ||| | ||||| | |||||| | || || Sbjct 4538913 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 4538972 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||||| ||||| ||||| |||||||| Sbjct 4538973 TCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 4539019 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 4539021 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 4539080 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || |||||| ||| Sbjct 4539081 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 4539140 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| ||||||||| || ||| | ||||| | |||||| | || || Sbjct 4539141 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 4539200 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||||| ||||| ||||| |||||||| Sbjct 4539201 TCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 4539247 >seq6 Length=4785000 Score = 136 bits (150), Expect = 8e-27 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||||||||| ||||| || || || ||||| |||||| Sbjct 2506671 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 2506730 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | || || |||||| ||| || ||||||||||| ||||| || ||| || || | || Sbjct 2506731 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 2506789 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||| || | || || || || ||||| ||||| ||||||| ||||| || || Sbjct 2506790 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 2506849 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 2506850 GATCTGCAT 2506858 Score = 113 bits (124), Expect = 9e-20 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| ||||| || | |||||| || || |||||||||||||| | Sbjct 3467046 ACCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 3467105 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 ||| |||||||| ||||| || || || ||||| ||||||| || || |||||| Sbjct 3467106 AAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCA 3467160 >seq4 Length=7609242 Score = 132 bits (146), Expect = 1e-25 Identities = 298/442 (67%), Gaps = 8/442 (2%) Strand=Plus/Minus Query 273620 AGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGAC 273679 ||||||||| || || ||||| | ||||| || || | ||||||| || || || Sbjct 2140452 AGACCAACCTGTACCGATACCCTCCGCGCCATTAACGAGCAACATCGGGATGATAGGCAC 2140393 Query 273680 ATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATC 273739 || || | ||||||| | ||||||||||| | ||| ||||| || ||||| Sbjct 2140392 GTAGTACACAGGCTCAACTGGGAAACCATCGTCGTCAGCGTAGCGCAACAGCGCGTCATC 2140333 Query 273740 CGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACT 273799 ||| ||| ||| ||||| || | || |||||| ||||| | | ||| Sbjct 2140332 TTCCTCAGGGAACACCAGGCGCGTGTGCTTCTGAAGCAGCGTGAAGATGTAACGAGGACT 2140273 Query 273800 CGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACC-CTCGGG--CAGTAGCCA 273856 || ||||||||| || ||||| | | |||||||||||| |||| ||| ||| Sbjct 2140272 AGCGGCGTCCTTGCCTCCCTGCAGTCGAGTACCAAACTGACCGGACGGGTACAGCAGCGG 2140213 Query 273857 GTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGA 273916 | | ||||||| || ||| ||||||| ||||| ||||| || ||| || || || Sbjct 2140212 G---AGGTTGTTGGAGCCCACGAAATCCTGCGCCATGTTCACAATCGTCGAGTGCAGCGA 2140156 Query 273917 TACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATA-TAACCACTGAACTGAGCAACCT 273975 ||||||||||||| ||||| ||||||| | | | ||||| | || || |||| Sbjct 2140155 AGCCTCGCCGTGGTGGTAGGCCGTGTGTTC-ACTACAGTAACCTGCAAGTTGCGCCACCT 2140097 Query 273976 TCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGGCT 274035 |||| || ||||| | || ||||| | || | | |||||| ||||| ||| | Sbjct 2140096 TCACCTCACTCGTTAGCTTGCGCTTCAGACAGGCGAAGAGCACCTTGCGCTGTGAGATTT 2140037 Query 274036 TGAACCCATCAACGACCGATGG 274057 ||| || || || ||||| || Sbjct 2140036 TGAGTCCGTCGACCACCGACGG 2140015 >seq1 Length=13391543 Score = 113 bits (124), Expect = 9e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 317029 GGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCA 317088 ||||| || || | ||| ||||| |||| || | ||| || |||||||| ||| ||| Sbjct 6653835 GGGAAGCCCTCGAGCTGGCCGTTGGCAATGGCGCGCATGAGCGTCGACTTACCACAACCG 6653894 Query 317089 TTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGA 317148 ||||||||||| ||||| || || | || ||| || || |||| ||||||||| Sbjct 6653895 TTGGGGCCGCACAGACCGTAACGGTGGCCGCGCTTGAGGCGAAGGCGGGCGTTGTTCAGC 6653954 Query 317149 AGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTC 317195 |||||| ||||||| || || || |||||||| || | |||||||| Sbjct 6653955 AGAATCATACCACCGTAAGCAAGCGAGAACTCGCAGTTGCACAGGTC 6654001 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| |||||||| ||||||| ||||||||||| |||| |||| ||| || Sbjct 6652977 TCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAGG 6653036 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||| ||||||||||| |||||||| |||||||| || | |||||| || ||| Sbjct 6653037 TGCGACTCAATGTGGTGGAATGCGTGCTGGGCCACGTAGGCGAAACGCATGGCAGGGTGC 6653096 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||| | || | |||| || || || |||| || || || || Sbjct 6653097 TTCCACACCTGGCCGCTGGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGAC 6653156 Query 316342 TTTCCCGCGCCGTT 316355 || || || ||||| Sbjct 6653157 TTACCGGCACCGTT 6653170 >seq12 Length=2105860 Score = 107 bits (118), Expect = 4e-18 Identities = 253/382 (66%), Gaps = 0/382 (0%) Strand=Plus/Minus Query 273597 GGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACC 273656 |||||||| | |||||| |||||||||| || || |||||| || || ||| Sbjct 1780139 GGGTTGTAGTTGGGAACGGAGCTAGACCAACCCGTTCCGATACCGTCGCTGCCGTTGACC 1780080 Query 273657 AGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAA 273716 || | | ||||||| |||| || |||| ||||| || | ||||| |||| Sbjct 1780079 AGCACCATTGGGATAACGGGGATGTACCATTCCGGCTCGATCGACTGTCCATCTTCGTCC 1780020 Query 273717 AGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGT 273776 |||||||||| | | | ||| | | || | | | ||||| | | | || Sbjct 1780019 AGGTACTTCAGAACGTCGTTGTCCAGAGGATCGTAGATCCGGCGCGTGAGCTGCTCCAAA 1779960 Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836 || ||||||||||| | || || || |||||||| || || | || ||| ||| Sbjct 1779959 TTGGTGAAAATGTAACGAGCGCTGGCCGCATCCTTGCCGCCCATCAAACGCGTACCGAAC 1779900 Query 273837 TGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTC 273896 ||||| |||| || || | ||||||||| || ||| | ||||||||||| ||| Sbjct 1779899 TGACCAATGGGCGACAGGAGGTGCACGTTGTTGCTGCCAACGAAGTCCTGAGCCATGTTC 1779840 Query 273897 ACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAA 273956 |||||| ||||| || ||||||||||||| || || ||| || | | |||| Sbjct 1779839 ACGATACAGCCCTGCAGACTCGCCTCGCCGTGGTGGTATGCAGAGTGCTCCGACACATAA 1779780 Query 273957 CCACTGAACTGAGCAACCTTCA 273978 ||| | || || ||||||| Sbjct 1779779 CCAGCTAGTTGTGCCACCTTCA 1779758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738100269628