Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 141 2e-28 seq6 113 1e-19 seq7 87.8 4e-12 >seq2 Length=11587142 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || |||||||| || || ||||| || ||| Sbjct 3716042 CAGATCTTCGTGAAGACCCTGACTGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 3716101 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| |||||||| |||||||| || || ||||| || |||||||| Sbjct 3716102 TCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAG 3716161 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || ||| || ||| || Sbjct 3716162 CGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTACAACATC 3716221 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 3716222 CAGAAGGAGTCGACTCTCCACCTGGT 3716247 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || |||||||| || || ||||| || ||| Sbjct 3716270 CAGATCTTCGTGAAGACCCTGACTGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 3716329 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| |||||||| |||||||| || || ||||| || |||||||| Sbjct 3716330 TCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAG 3716389 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || ||| || ||| || Sbjct 3716390 CGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTACAACATC 3716449 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 3716450 CAGAAGGAGTCGACTCTCCACCTGGT 3716475 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || |||||||| || || ||||| || ||| Sbjct 3716498 CAGATCTTCGTGAAGACCCTGACTGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 3716557 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| |||||||| |||||||| || || ||||| || |||||||| Sbjct 3716558 TCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAG 3716617 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || ||| || ||| || Sbjct 3716618 CGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTACAACATC 3716677 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 3716678 CAGAAGGAGTCGACTCTCCACCTGGT 3716703 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || |||||||| || || ||||| || ||| Sbjct 4538560 CAGATCTTCGTCAAGACCCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 4538501 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| |||||||| |||||||| ||||| ||||| || |||||||| Sbjct 4538500 TCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 4538441 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 4538440 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 4538381 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 4538380 CAGAAGGAGTCGACGCTGCACCTGGT 4538355 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || |||||||| || || ||||| || ||| Sbjct 4538788 CAGATCTTCGTCAAGACCCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 4538729 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| |||||||| |||||||| ||||| ||||| || |||||||| Sbjct 4538728 TCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 4538669 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 4538668 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 4538609 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 4538608 CAGAAGGAGTCGACGCTGCACCTGGT 4538583 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || |||||||| || || ||||| || ||| Sbjct 4539016 CAGATCTTCGTCAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 4538957 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| |||||||| |||||||| ||||| ||||| || |||||||| Sbjct 4538956 TCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 4538897 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 4538896 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 4538837 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 4538836 CAGAAGGAGTCGACGCTGCACCTGGT 4538811 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || |||||||| || || ||||| || ||| Sbjct 4539244 CAGATCTTCGTCAAGACCCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 4539185 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| |||||||| |||||||| ||||| ||||| || |||||||| Sbjct 4539184 TCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 4539125 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 4539124 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 4539065 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 4539064 CAGAAGGAGTCGACGCTGCACCTGGT 4539039 >seq6 Length=4785000 Score = 113 bits (124), Expect = 1e-19 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || ||||| || || ||||| || ||| Sbjct 2506855 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCCGAC 2506796 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||| || || ||||| || || || |||||||| || || ||||| || |||||||| Sbjct 2506795 AGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAG 2506736 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || | || || ||| || Sbjct 2506735 CGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAACATC 2506676 Query 178104 CAAAA 178108 || || Sbjct 2506675 CAGAA 2506671 >seq7 Length=4006126 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 214251 TCCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGACATCATCAAG 214310 |||||| || ||||||||||||||||| | |||||| ||| || || || | || Sbjct 2440016 TCCCTCCTTCTCGTACTTTTCATAAAGGGTCTCAAACTCCTCGCCCCAGCACTCGTAGAG 2440075 Query 214311 ACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGACTCTTTTCAT 214370 || ||||| || ||||||||||| |||||||| | ||||| || || || ||||| Sbjct 2440076 CCCAGGAGCTTCATTGGGGCAGAACAGACTCCACTTGCCATTGGCCTCCACCCTCTTCAT 2440135 Query 214371 GAAAAGGTCGG 214381 ||| || |||| Sbjct 2440136 GAACAGATCGG 2440146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729935329908