Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2060 131 2e-25 seq1363 123 3e-23 >seq2060 Length=42285 Score = 131 bits (144), Expect = 2e-25 Identities = 377/571 (66%), Gaps = 12/571 (2%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || || ||||| ||||| || | || ||||| | ||||| || ||||| || | Sbjct 32383 ACATGAGGCAGGCGAAGTCGCAGTGCATGCCTTCGTCACGACTGATCAGCTCGTTGGAGA 32442 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | | | || ||||| || || ||||| | ||| || || | | ||| || || | Sbjct 32443 AGCTGAGGCCAGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAAGGAGCCCG 32502 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC-GTCT 17134 | ||||| || || || |||| || ||||| | || || || || |||| || | Sbjct 32503 AGAAGAAGATGCCTTCCACGGCCGCGAACGCCAGCAAACGCTCCGCATACGAGGCCGAGC 32562 Query 17135 TTGTTACGAATCCATTTCTGCACCCA-CTCGGCTTTTTGCTTTATGCAATCCATCGTTTC 17193 | || | ||| || || |||| || | ||| ||| | | ||| || || || Sbjct 32563 GCGAGTCGCA-CCACTTGAGCGCCCAACTGGCCTTCTTGGTC-ACGCACGGGATGGTCTC 32620 Query 17194 TATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAG 17253 ||||| | | | || || ||| ||| | || ||||| |||||||| || Sbjct 32621 GATGGCGCGCAGCAGATGGTCCTTCTCCACCGTGTCCTTAATGTACGTGTCGATGAGCAG 32680 Query 17254 GCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGC 17313 ||| | || ||||| |||||||| ||||| ||||| || ||||| ||||| || || Sbjct 32681 CGAGTAGACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGC 32740 Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCCG 17371 || | | || ||||| | ||| |||| || || || ||||||||||||||| Sbjct 32741 CTCGGGCACCTGCACTTCGCTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCCG 32798 Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGT--CCGGTGTAA 17429 ||||| |||||||| || |||| | ||||| ||||| || | ||||| | Sbjct 32799 TCGCTGGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGCGGCGCTCATTGTCGGTG--A 32856 Query 17430 GAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAG 17489 | || ||||||||| | || | | ||||| || |||| |||||| || || | Sbjct 32857 GGTTGCCCCAGTCCTTGAGGTCGTGCACCAGATCCAGCTCCTCGGCGGTCCAGAAGCTGG 32916 Query 17490 CCACTGCCTTTTTATACATATTCCAAATATC 17520 || | ||||| || ||||| | ||| || || Sbjct 32917 CCTCGGCCTTCTTGTACATCTGCCAGATCTC 32947 >seq1363 Length=31850 Score = 123 bits (136), Expect = 3e-23 Identities = 202/289 (70%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || ||||| |||||||| || ||| | || ||||| |||||||| ||||| ||||| Sbjct 9653 ATGTACGTGTCGATGAGCAGCGAGTAGACCTCCGAGTGGATGTTCTCGATGGCGATCTGG 9594 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTA 17351 || ||||| ||||| || || || | | || ||||| | ||| |||| || | Sbjct 9593 AAGCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACTTCGCTGCTGAA--GTTCATGGCCA 9536 Query 17352 GATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411 || |||||||||||||||||||| |||||||| |||||||| | ||||| ||||| | Sbjct 9535 AGTTCTCGTTCACGATGCCGTCGCTGGCGGCGAAGAACGCCAACACGTGCTTGATGAAGT 9476 Query 17412 ATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTT 17471 |||| | || | ||||||||| | || | | ||||| || | Sbjct 9475 GGCGCTCGTTGTCCGAGAGGTTGGCCCAGTCCTTCAGGTCGTGCACCAGATCCAGCTCCT 9416 Query 17472 CGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATC 17520 ||| |||||| || || ||| | ||||| || ||||| | |||||| || Sbjct 9415 CGGCGGTCCAGAAGCTGGCCTCGGCCTTCTTGTACATCTGCCAAATCTC 9367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517468608622680