Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2060 116 4e-21 >seq2060 Length=42285 Score = 116 bits (128), Expect = 4e-21 Identities = 306/459 (67%), Gaps = 10/459 (2%) Strand=Plus/Plus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || || ||||||||||| || | |||||||| | ||||| || |||||||| | Sbjct 32383 ACATGAGGCAGGCGAAGTCGCAGTGCATGCCTTCGTCACGACTGATCAGCTCGTTGGAGA 32442 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||||| || || ||||| | |||||| || | |||| || || ||| Sbjct 32443 AGCTGAGGCCAGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGG-AGCAGAAGGAGCCC 32501 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC--AT 16370 || ||||| || || || || | || || || | || || ||||| |||| || | Sbjct 32502 GAGAAGAAGATGCCTTCCACGGCCGCGAACGCCAGCAAACGCTCCGCATACGAGGCCGAG 32561 Query 16371 CTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTT 16430 | | | || | ||| || | |||| ||| || | | | || || || | Sbjct 32562 CGCGAGT-CGCA-CCACTTGAGCGCCCAACTGGCCTTCTTGGTCACGCACGGGATGGTCT 32619 Query 16431 CTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTA 16490 | ||||| | || | || || ||| | || | || ||||| || || || | Sbjct 32620 CGATGGCGCGCAGCAGATGGTCCTTCTCCACCGTGTCCTTAATGTACGTGTCGATGAGCA 32679 Query 16491 AACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAG 16550 ||| | || ||||| |||||||| ||||| ||||| || || |||||||| || | Sbjct 32680 GCGAGTAGACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCG 32739 Query 16551 CCTCCGCTATTTGTACTTCCACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACC 16608 |||| | | || ||||| | || |||| ||||||||||| |||||||| || Sbjct 32740 CCTCGGGCACCTGCACTTCGCTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCC 32797 Query 16609 GTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 ||| || || || || || |||| | |||||| ||||| Sbjct 32798 GTCGCTGGCGGCGAAGAAGGCCAGCACGTGCTTGATGAA 32836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511338320715320