Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_001396.1 Length=7308 Score E Sequences producing significant alignments: (Bits) Value seq7226 96.9 2e-16 >seq7226 Length=2852 Score = 96.9 bits (106), Expect = 2e-16 Identities = 198/288 (69%), Gaps = 5/288 (2%) Strand=Plus/Plus Query 3579 GGCACGTTCCCCGAATCGCCGCCTTACCAGACGACAACGTACACC-CCAC-CCACCACCA 3636 ||||| |||||||| ||||| | | ||| | || ||| | |||| ||||| | Sbjct 2399 GGCACTTTCCCCGAGTCGCCTCAGCATCAGTCAGGCACTTACCTCACCACGCCACCTGGA 2458 Query 3637 GGGA-TCTGTGATGAGCAGTAGTGCACGCGAGTTACTGAAGTGGATTGCGCTTGT-CTGC 3694 | || || | |||| |||| | | || || || || || ||| | || || || ||| Sbjct 2459 GAGAATCGGCTATGACCAGTGGCGGGCGTGAATTGCTCAAATGGCTCGCCCTGGTGCTG- 2517 Query 3695 ATGACATTCGACCACGTTGCCAAGGTGTTCTATGACGGCTACGTGCCCGTGTTGTCCGAG 3754 ||||| ||| ||| | | | |||||| | || ||||||| | ||||| || Sbjct 2518 ATGACCGGCGATCACATCGTGACCGTGTTCGGTCTTGGTCACGTGCCGGGTGTGTCCCAG 2577 Query 3755 CTAGGCCGGATTGCGTTTCCGCTCTTCGCACTGGTCATGGCCTACAACCTGGCACAGCCT 3814 || || || ||||||| || | ||||| ||||||||||| ||||||||||| || ||| Sbjct 2578 CTGGGTCGTGTTGCGTTCCCTGTGTTCGCCCTGGTCATGGCTTACAACCTGGCGCAACCT 2637 Query 3815 GGAGCTGATGTAGGCAAGTCGGTCCGCCGGCTGGTGTGCTGGGGGCTG 3862 || || |||| || ||||| | || || |||| | ||||| ||| Sbjct 2638 GGCGCCGATGCGGGGAAGTCAGCGCGTCGCCTGGCGCTTTGGGGCCTG 2685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23267284413408