Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq8319 297 2e-75 seq10380 248 1e-60 >seq8319 Length=37522 Score = 297 bits (328), Expect = 2e-75 Identities = 512/731 (70%), Gaps = 17/731 (2%) Strand=Plus/Plus Query 145642 AGCCTGGGAAAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTG 145701 ||| |||| || ||||| || ||| || ||||| ||| ||| |||||||||||||| Sbjct 9858 AGCGTGGGGAACGGCCGTGGCGTCCGCGTGAGCTGCTGCTGCAGCGGCTCCACGTGGTTC 9917 Query 145702 AGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGG 145761 || || ||||| ||||| || | |||||||||||| || ||||||| ||||| | | Sbjct 9918 AGATACACGTGGGCGTCGCCAATGACGTGGATGAACTCTCCGGGCTGCAGGCCAGCCACT 9977 Query 145762 TGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCC 145821 ||||| || | || ||||| | ||| ||||| ||||||||||| || ||||||||| Sbjct 9978 TGGGCCACGAGTCTCGTGAGCAGCGCGTAACTGGCGATGTTGAAGGGTACGCCCAGCCCC 10037 Query 145822 ATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGG 145881 || || |||| |||||||||| || || || ||||| ||| ||||||||||||||||| Sbjct 10038 ATATCGGCCGAACGCTGGTACATTTGACACGACAGCTCGCCGTCCGCCACGTAGAACTGG 10097 Query 145882 CACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTG 145941 || | | |||||| |||||||| ||||| || ||| |||||||||||||| |||| Sbjct 10098 CAGAACATGTGGCACGGCGGCAGCGCCATCTCGTTCAGATCCGCCGGGTTCCAAGCGGAA 10157 Query 145942 AGGACGAGCCTCCTG-CTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTG 146000 || |||| || | | | ||| || ||| | | || | || | || || || Sbjct 10158 AGCACGATCCGACGGTCGCTC-GGATTCGTTCGTAGCTTCTGAATGACTTCGGCCAGTTG 10216 Query 146001 GTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACGTACGCGGCCCCGAAGTGCC 146059 ||||||||| || || |||||| | | || | |||| |||| ||| ||||| || | Sbjct 10217 GTCCACGCCTTGACCAGTGTAATCAG-CGTGCATGTCCGTGTACTTGGCTCCGAAATGGC 10275 Query 146060 TCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGC-CCCAGCCCGGCC 146118 ||||||||| ||||| || |||||||| || || | |||| | || ||||| Sbjct 10276 GCCACTGGAAGCCGTAAACCGGCCCCAGATCGCCCGTTTCCC-GAGCTTGAAGCCCTCGA 10334 Query 146119 CGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTC-GCGGAGAG 146177 | | | || | || || || |||||| |||||||||| | || | || || || | | Sbjct 10335 CTGTCCAGATACTCACGCGATCCGTTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAAC 10394 Query 146178 CTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCA 146237 | | | || |||| || || |||||||| | ||||| || || || | ||| Sbjct 10395 GTGGCT-GCGTTCGTGTCGCCGCTAATGAACCACAAGAGCTCCTCAGCCACGCCGCGCCA 10453 Query 146238 GAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGCCCCGCA---GGGAGTACTTGGC 146291 ||| || | |||||| || ||||| || ||| | ||||||| | || | | Sbjct 10454 GAACACGCGCTTGGTCGTGAGCAGAGGAAACACATCCCCCCGCAAATTGAAGCGCAT--- 10510 Query 146292 CTGGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCCTGTCCCCCCTGCGCACCCCGTT 146351 |||| | || |||||||| | || || ||| || | ||| || | ||| | || | Sbjct 10511 CTGGGCGCCAAAGACGGATAAAGTTCCGGTGCCTGTGCGGTCGCCACGTCGCGCGCCTTG 10570 Query 146352 CGCCAGGATCT 146362 || |||||||| Sbjct 10571 CGTCAGGATCT 10581 >seq10380 Length=37184 Score = 248 bits (274), Expect = 1e-60 Identities = 440/631 (70%), Gaps = 8/631 (1%) Strand=Plus/Minus Query 145642 AGCCTGGGAAAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTG 145701 ||| |||| || ||||| || ||| || ||||| ||| || |||||||||||||| Sbjct 12525 AGCGTGGGGAACGGCCGTGGCGTCCGCGTGAGCTGCTGCTGTAGCGGCTCCACGTGGTTC 12466 Query 145702 AGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGG 145761 || || ||||| ||||| || | ||||||||| || || ||||||| ||||| | | Sbjct 12465 AGATACACGTGGGCGTCACCAATGACGTGGATAAACTCGCCGGGCTGCAGGCCAGCCACT 12406 Query 145762 TGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCC 145821 ||||| || | || ||||| | ||| || || ||||||||||| || ||||||||| Sbjct 12405 TGGGCCACGAGTCTCGTAAGCAGCGCGTAACTAGCGATGTTGAAGGGTACGCCCAGCCCC 12346 Query 145822 ATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGG 145881 || || |||| ||||| |||| || || || || || || |||||||||||||||| Sbjct 12345 ATATCGGCCGAACGCTGATACATTTGACACGACAGTTCGCCATCCGCCACGTAGAACTGA 12286 Query 145882 CACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTG 145941 || | | |||||| ||||| || ||||| || ||| |||||||||||||| |||| Sbjct 12285 CAAAACATGTGGCACGGCGGTAGTGCCATCTCGTTCAGATCCGCCGGGTTCCAAGCGGAA 12226 Query 145942 AGGACGA-GCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTG 146000 || |||| || | | ||| || ||| | | || | || | || || || Sbjct 12225 AGCACGATGCGACGGTCGCTC-GGATTCGTTCGTAGCTTCTGAATGACTTCAGCCAGTTG 12167 Query 146001 GTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACGTACGCGGCCCCGAAGTGCC 146059 ||||||||| || || |||||| | | || | || | |||| ||||||||| || | Sbjct 12166 GTCCACGCCTTGGCCAGTGTAATCAG-CGTGCATGTTCGTGTACTTGGCCCCGAAATGAC 12108 Query 146060 TCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGC-CCCAGCCCGGCC 146118 ||| ||||| |||||||| |||||||| || || | |||| | || ||||| Sbjct 12107 GCCATTGGAAGCCGTAGACCGGCCCCAGATCGCCCGTTTCCC-GAGCTTGAAGCCCTCGA 12049 Query 146119 CGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACG-CCCCTCGCGGAGAG 146177 | | | || | || || || |||||| |||||||||| | || | || | || | | Sbjct 12048 CTGTCCAGATACTCACGCGATCCGTTGCCGTCCCAGATGTGGATGTCCTTTTGCTGCAAC 11989 Query 146178 CTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCA 146237 | | | || |||| || || |||||||| | ||||| || || || | ||| Sbjct 11988 GTGGCT-GCGTTCGTGTCGCCGCTAATGAACCACAAGAGCTCCTCAGCCACGCCGCGCCA 11930 Query 146238 GAAGACCCTCTTGGTGGTCAGCAGGGGGAAC 146268 ||| || | |||||| || ||||| || ||| Sbjct 11929 GAACACGCGCTTGGTCGTGAGCAGAGGAAAC 11899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589989018700040