Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2060 417 8e-112 seq1363 396 3e-105 seq5117 145 8e-30 seq1233 145 8e-30 seq779 145 8e-30 seq10786 141 1e-28 seq6703 136 4e-27 seq1268 134 1e-26 seq10994 122 9e-23 seq3516 98.7 1e-15 seq42 98.7 1e-15 >seq2060 Length=42285 Score = 417 bits (462), Expect = 8e-112 Identities = 612/859 (71%), Gaps = 10/859 (1%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | ||| ||||||||| |||||||||| | ||||| || || | | ||| Sbjct 33004 GAGCCGTTCCTGATCGAGAACCCGAACCGGTTCGTGCTGTTCCCGATCCAGGAGCTGGAG 32945 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| |||||||||| ||||||| |||| ||| Sbjct 32944 ATCTGGCAGATGTACAAGAAGGCCGAGGCCAGCTTCTGGACCGCCGAGGAGCTGGATCTG 32885 Query 116696 -TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 | || | | | || ||||||| | | | |||||| ||||||| ||||||||||| Sbjct 32884 GTGCACGACCTCAAG-GACTGGGGCAACCTCACCGACAATGAGCGCCGCTTCATCAAGCA 32826 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 |||||||||||| ||||||||||||||||||||||| |||||||| |||| | | || Sbjct 32825 CGTGCTGGCCTTCTTCGCCGCCAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTT 32766 Query 116815 CGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | ||| || ||||||||| |||||||||| |||||||||||||| ||||||||||| | Sbjct 32765 C-AGCAGCGAAGTGCAGGTGCCCGAGGCGCGCTGCTTCTACGGCTTCCAGATCGCCATCG 32707 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGG 116933 ||||| | |||||||| | || ||| ||||||||||||||| | ||| || Sbjct 32706 AGAACATCCACTCGGAGGTCTACTCGCTGCTCATCGACACGTACATTAAGGACACGGTGG 32647 Query 116934 AGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGT 116993 ||||| || | || || |||||||||||| || |||||||| | |||||||| | Sbjct 32646 AGAAGGACCATCTGCTGCGCGCCATCGAGACCATCCCGTGCGTGACCAAGAAGGCCAGTT 32587 Query 116994 GGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCG 117053 ||||||| ||| || | | |||| | | | ||||| || |||| |||| Sbjct 32586 GGGCGCTCAAGTGGTGCGACTCGCGCTCGGCCTCGTATGCGGAGCGTTTGCTGGCGTTCG 32527 Query 117054 CGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAAC 117113 ||||||| || ||| ||||||| |||||| ||| | |||| || ||||| ||||| | Sbjct 32526 CGGCCGTGGAAGGCATCTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTGAAGAAGC 32467 Query 117114 GCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGC 117173 ||||||||||||| ||||| | ||| ||||||||| ||| | ||||| || ||| Sbjct 32466 GCGGCCTCATGCCTGGCCTCAGCTTCTCCAACGAGCTGATCAGTCGTGACGAAGGCATGC 32407 Query 117174 ATTGCGACTTTGCCTGTTTGCTGTTC---AAGCATTTGGTGCAGCGACCGAGCGCGGCGC 117230 | |||||||| ||||| | ||| | |||| || ||| ||| | || || Sbjct 32406 ACTGCGACTTCGCCTGCCTCATGTACTCGAAGCTCGTGAACAAGCTGCCG---GAGGAGC 32350 Query 117231 GCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGC 117290 | || | || || |||||| || | |||||||| ||| | || ||| Sbjct 32349 GTGTGCACGCCATTATCCGCGACGCCGTGGTGATCGAGCACGAGTTCGTGCGGGACTCGC 32290 Query 117291 TGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCG 117350 |||| ||| ||| | || | || | | |||| || ||||| |||||||| | Sbjct 32289 TGCCTGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTCGTGG 32230 Query 117351 CCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGG 117410 ||||| | |||||| | ||||| || ||||| ||||||| | |||||| | | Sbjct 32229 CCGACCGCCTGCTGTACTCGCTGGGCGTGTCCAAGATCTACAACGCCAAGAACCCGTTCG 32170 Query 117411 ACTTTATGAACCTCATCTC 117429 ||| ||| || | ||||| Sbjct 32169 ACTGGATGGACATGATCTC 32151 >seq1363 Length=31850 Score = 396 bits (438), Expect = 3e-105 Identities = 612/864 (71%), Gaps = 20/864 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | ||| ||||||||| |||||||||| | ||||| || || | | ||| Sbjct 9310 GAGCCGTTTCTGATCGAGAACCCGAACCGGTTCGTGCTCTTCCCGATCCAGGAGCTGGAG 9369 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| |||||||||| ||||||| |||| ||| Sbjct 9370 ATTTGGCAGATGTACAAGAAGGCCGAGGCCAGCTTCTGGACCGCCGAGGAGCTGGATCTG 9429 Query 116696 TCCAAGGACACGAGCGACTGGG---AGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 | ||| || ||||||| | | || | |||||||||||||| ||||||||| Sbjct 9430 GTGCACGACCTGAAGGACTGGGCCAACCTCTCG---GACAACGAGCGCCACTTCATCAAG 9486 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 |||||| |||| || ||||||||||||||||||||||| |||||||| ||| | | Sbjct 9487 CACGTGTTGGCGTTCTTCGCCGCCAGCGACGGCATCGTGAACGAGAACTTGGCCATGAAC 9546 Query 116813 TTCGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| ||| || ||||||||| |||||||||| |||||||||||||| ||||||||||| Sbjct 9547 TTCAG-CAGCGAAGTGCAGGTGCCCGAGGCGCGCTGCTTCTACGGCTTCCAGATCGCCAT 9605 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGA 116931 |||||| | |||||||| | || ||| ||||||||||||||| | ||| Sbjct 9606 CGAGAACATCCACTCGGAGGTCTACTCGCTGCTCATCGACACGTACATTAAGGACGCGGT 9665 Query 116932 GGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGA 116991 ||||||| | | || || |||||||||||| || |||||||| | |||||||| Sbjct 9666 GGAGAAGGATCATCTGCTGCGCGCCATCGAGACCATCCCGTGCGTGACCAAGAAGGCCAG 9725 Query 116992 GTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTT 117051 |||||||| ||| || | | |||| | | | ||||| || ||||||| Sbjct 9726 TTGGGCGCTCAAGTGGTGCGACTCGCGCTCGGCCTCGTATGCTGAGCGTTTGTTGGCCTT 9785 Query 117052 CGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAA 117111 ||||||||| || ||| ||||||| || ||| || | |||| || ||||| ||||| Sbjct 9786 CGCGGCCGTGGAAGGCATCTTCTTCTCCGGCTCCTTTTGCTCCATCTTCTGGCTGAAGAA 9845 Query 117112 ACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCT 117171 |||||||||||||| ||||| | ||| ||||||||| ||| | ||||| || | Sbjct 9846 GCGCGGCCTCATGCCTGGCCTCAGCTTCTCCAACGAGCTGATCAGTCGTGACGAAGGCAT 9905 Query 117172 GCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTG---CAGCGACCGAGCGCGGC 117228 ||| |||||||||||||| | ||| | | | | ||| ||| ||| | || Sbjct 9906 GCACTGCGACTTTGCCTGCCTCATGTACTCGAAACTCGTGAACAAGCTGCCG---GAGGA 9962 Query 117229 GCGCGT-CAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 ||| || || | || | |||||| || |||||||| ||| | || Sbjct 9963 GCGTGTGCACAG-CATTATACGCGACGCCGTGTTGATCGAGCACGAGTTCGTGCGGGACT 10021 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347 ||||||||||| || | || | || | | |||| || ||||| ||||||| Sbjct 10022 CGCTGCCGGTGGAGCTCATCGGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTCG 10081 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC--CAACCC 117405 | |||||| |||||||| | ||||| || ||||| |||| |||||| ||||| Sbjct 10082 TGGCCGACCGGCTGCTGTACTCGCTGGGCGTGTCCAAGATCTAC--CACGCCAAGAACCC 10139 Query 117406 GCTGGACTTTATGAACCTCATCTC 117429 | | |||| ||| || | ||||| Sbjct 10140 GTTCGACTGGATGGACATGATCTC 10163 >seq5117 Length=12130 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| || ||||| | ||||| || | | Sbjct 12128 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 12069 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | ||||| | ||||| ||||||||||| | ||||| Sbjct 12068 GACTCGATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCA 12010 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 12009 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 11950 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | || || || || ||| | ||| || | |||||| Sbjct 11949 CATCCAGAAGGAGTCTACTCTCCACCTGGTGCTTCGCCTGCGCGGCGGC 11901 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| || ||||| | ||||| || | | Sbjct 11900 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 11841 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | ||||| | ||||| ||||||||||| | ||||| Sbjct 11840 GACTCGATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCA 11782 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 11781 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 11722 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||||| | || || || || ||| Sbjct 11721 CATCCAGAAGGAGTCTACTCTCCACCTGGTG 11691 >seq1233 Length=22992 Score = 145 bits (160), Expect = 8e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||| ||||| || ||||| | ||||| || | Sbjct 559 AAGATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATCACGCTGGACGTGGAGCCT 500 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| | ||| | ||||| | ||||| ||||||||||| | || Sbjct 499 TCGGACTCGATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGA 441 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 440 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTA 381 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | ||||| || || ||| | ||| | | |||||| Sbjct 380 CAACATCCAGAAGGAGTCTACGCTTCACCTGGTGCTTCGCCTTCGCGGCGGC 329 Score = 138 bits (152), Expect = 1e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||| ||||| || ||||| | ||||| || | Sbjct 4728 AAGATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATCACGCTGGACGTGGAGCCG 4787 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||| | | | | ||| | ||||| | ||||| ||||||||||| | ||| Sbjct 4788 TCGGACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGAC 4847 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| |||| ||||| || | ||||||| Sbjct 4848 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTAC 4907 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||||| | ||||| || || ||| | ||| Sbjct 4908 AACATCCAGAAGGAGTCTACGCTTCACCTGGTGCTTCGC 4946 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || || ||||| | ||||| || | | Sbjct 328 ATGCAGATCTTCGTGAAGACTCTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCG 269 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | | ||| | ||||| | ||||| ||||||||||| | |||||| Sbjct 268 GACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAG 209 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| |||| ||||| || | |||||||||| Sbjct 208 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 149 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | ||||| || || ||| | ||| | | |||||| Sbjct 148 ATCCAGAAGGAGTCTACGCTTCACCTGGTGCTTCGCCTTCGCGGCGGC 101 >seq779 Length=1215 Score = 145 bits (160), Expect = 8e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||| ||||| || ||||| | ||||| || | Sbjct 244 AAGATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATCACGCTGGACGTGGAGCCT 185 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| | ||| | ||||| | ||||| ||||||||||| | || Sbjct 184 TCGGACTCGATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGA 126 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 125 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTA 66 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | || || || || ||| | ||| || | |||||| Sbjct 65 CAACATCCAGAAGGAGTCTACTCTCCACCTGGTGCTTCGCCTGCGCGGCGGC 14 >seq10786 Length=3597 Score = 141 bits (156), Expect = 1e-28 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || || ||||| || ||||| | ||||| || | Sbjct 244 AAGATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACGATCACGCTGGACGTGGAGCCT 185 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| | ||| | ||||| | ||||| ||||||||||| | || Sbjct 184 TCGGACTCGATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGA 126 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 125 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTA 66 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | || || || || ||| | ||| || | |||||| Sbjct 65 CAACATCCAGAAGGAGTCTACTCTCCACCTGGTGCTTCGCCTGCGCGGCGGC 14 >seq6703 Length=12229 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || || ||||| | ||||| || | | Sbjct 12031 ATGCAGATCTTCGTGAAGACTCTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCG 11972 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | | ||| | ||||| | ||||| ||||||||||| | |||||| Sbjct 11971 GACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAG 11912 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| |||| ||||| || | |||||||||| Sbjct 11911 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 11852 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| | |||||||| || ||| Sbjct 11851 ATCCAGAAGGAGTCTACGCTGCACCTGGTG 11822 Score = 127 bits (140), Expect = 2e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 40768 AAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCG 40827 ||| | ||||| | ||||| ||||||||||| | |||||||| || || |||| ||| Sbjct 12181 AAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATCTTCGCC 12122 Query 40828 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACG 40887 ||||| |||||||| |||| ||||| || | |||||||||||||||||||||| | ||| Sbjct 12121 GGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCTACG 12062 Query 40888 CTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || || || ||| | ||| | | |||||| Sbjct 12061 CTTCACCTGGTGCTTCGCCTTCGCGGCGGC 12032 >seq1268 Length=19578 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| || ||||| | ||||| || | | Sbjct 3 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 62 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | ||||| | ||||| ||||||||||| | ||||| Sbjct 63 GACTCGATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCA 121 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 122 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 181 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||||| | || || || || ||| Sbjct 182 CATCCAGAAGGAGTCTACTCTCCACCTGGTG 212 >seq10994 Length=1377 Score = 122 bits (134), Expect = 9e-23 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || ||||| || |||||||| | ||||| || | | Sbjct 1365 ATGCAGATCTTTGTGAAGACCCTGACGGGGAAGACCATCACGCTGGACGTGGAGCCGTCG 1306 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| || |||||||| | |||||| Sbjct 1305 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 1246 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| |||| ||||| || ||||||||| Sbjct 1245 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCGGACTACAAC 1186 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 1185 ATCCAGAAGG 1176 >seq3516 Length=19581 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| || || |||| ||| ||||| |||||||| |||| ||||| || ||| Sbjct 16737 GACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCGGAC 16796 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||||||||| |||||| || || |||||||| || | || || ||| Sbjct 16797 TACAACATCCAGAAGGAGAGCACGCTCCACCTGGTGTTGCGTCTGCGCGGTGGTGGC 16853 >seq42 Length=28877 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| || || |||| ||| ||||| |||||||| |||| ||||| || ||| Sbjct 26014 GACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCGGAC 26073 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||||||||| |||||| || || |||||||| || | || || ||| Sbjct 26074 TACAACATCCAGAAGGAGAGCACGCTCCACCTGGTGTTGCGTCTGCGCGGTGGTGGC 26130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515142554703760