Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq10994 122 1e-22 seq5117 116 4e-21 seq1268 116 4e-21 seq10786 113 5e-20 seq6703 111 2e-19 seq1233 109 6e-19 seq779 107 2e-18 seq3516 87.8 2e-12 seq42 87.8 2e-12 seq6148 84.2 3e-11 seq2466 82.4 9e-11 >seq10994 Length=1377 Score = 122 bits (134), Expect = 1e-22 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | ||| || || |||| || |||||||| || ||||| | Sbjct 1176 CCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 1235 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | || ||||||||||| | ||| | || ||||||||| |||||| || |||| | | | Sbjct 1236 TCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 1294 Query 43114 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 || | |||| || ||||| || | ||||||||| || ||||| || ||||| ||| Sbjct 1295 TCAATGCTGTCCGACGGCTCCACGTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACA 1354 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 1355 AAGATCTGCAT 1365 >seq5117 Length=12130 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||| || || |||| || |||||||| || ||||| Sbjct 11709 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAA 11768 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| ||| | || ||||||||| |||||| || || | ||| Sbjct 11769 GATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGT 11827 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| | ||||| || | |||||| || |||||||| || ||||| | Sbjct 11828 TGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCA 11887 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 11888 CGAAGATCTGCAT 11900 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||| || || |||| || |||||||| || ||||| Sbjct 11937 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAA 11996 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| ||| | || ||||||||| |||||| || || | ||| Sbjct 11997 GATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGT 12055 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| | ||||| || | |||||| || |||||||| || ||||| | Sbjct 12056 TGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCA 12115 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 12116 CGAAGATCTGCAT 12128 >seq1268 Length=19578 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||| || || |||| || |||||||| || ||||| Sbjct 194 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAA 135 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| ||| | || ||||||||| |||||| || || | ||| Sbjct 134 GATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGT 76 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| | ||||| || | |||||| || |||||||| || ||||| | Sbjct 75 TGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCA 16 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 15 CGAAGATCTGCAT 3 >seq10786 Length=3597 Score = 113 bits (124), Expect = 5e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||| || || |||| || |||||||| || ||||| Sbjct 50 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAA 109 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| ||| | || ||||||||| |||||| || || | ||| Sbjct 110 GATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGT 168 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| | ||||| || | |||||| || ||||| || || ||||| | Sbjct 169 TGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCAGTCAGAGTCTTCA 228 Query 43171 CAAAGATTTGCATTTT 43186 | ||||| ||||| || Sbjct 229 CGAAGATCTGCATCTT 244 >seq6703 Length=12229 Score = 111 bits (122), Expect = 2e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 42950 CTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 43009 ||| | ||| || | | ||| | ||||| |||| || |||||| || || ||||| Sbjct 11798 CTAGTTTCCGCCACGAAGACGAAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTA 11857 Query 43010 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || ||| || || |||| || |||||||| || ||||| || || ||||||||||| Sbjct 11858 GTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 11917 Query 43070 GGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA 43129 | ||| | || ||||||||| |||||| || || | | | | || ||| || Sbjct 11918 AGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGACGG 11977 Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || | |||||| || || ||||| || ||||| || ||||| ||||| Sbjct 11978 CTCCACGTCCAGCGTGATCGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 12031 >seq1233 Length=22992 Score = 109 bits (120), Expect = 6e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||| || || |||| || |||||||| || ||||| Sbjct 4922 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAA 4863 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | ||| | || ||||||||| |||||| || || | | Sbjct 4862 GATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATT 4803 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || ||| || ||||| || | |||||| || ||||| || || ||||| || Sbjct 4802 GTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCAGTGAGGGTCTTCAC 4743 Query 43172 AAAGATTTGCATTTT 43186 ||||| ||||| || Sbjct 4742 GAAGATCTGCATCTT 4728 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||| || || |||| || |||||||| || ||||| Sbjct 137 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAA 196 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | ||| | || ||||||||| |||||| || || | | Sbjct 197 GATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACATT 256 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || ||| || ||||| || | |||||| || || ||||| || ||||| || Sbjct 257 GTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTCCCCGTCAGAGTCTTCAC 316 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 317 GAAGATCTGCAT 328 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||| || || |||| || |||||||| || ||||| Sbjct 365 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAA 424 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | ||| | || ||||||||| |||||| || || | ||| Sbjct 425 GATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGT 483 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| | ||||| || | |||||| || ||||| || || ||||| | Sbjct 484 TGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCAGTGAGGGTCTTCA 543 Query 43171 CAAAGATTTGCATTTT 43186 | ||||| ||||| || Sbjct 544 CGAAGATCTGCATCTT 559 >seq779 Length=1215 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||| || || |||| || |||||||| || ||||| Sbjct 50 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAA 109 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | ||| | || ||||||||| |||||| || || | ||| Sbjct 110 GATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGT 168 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| | ||||| || | |||||| || ||||| || || ||||| | Sbjct 169 TGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCAGTGAGGGTCTTCA 228 Query 43171 CAAAGATTTGCATTTT 43186 | ||||| ||||| || Sbjct 229 CGAAGATCTGCATCTT 244 >seq3516 Length=19581 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||||||||| || | ||||||||||| || || ||||| || | ||| || || | Sbjct 16838 ACGCAACACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCC 16779 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||| || |||||||| || ||||| || || ||||||||||| | ||| Sbjct 16778 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 16731 >seq42 Length=28877 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||||||||| || | ||||||||||| || || ||||| || | ||| || || | Sbjct 26115 ACGCAACACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCC 26056 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||| || |||||||| || ||||| || || ||||||||||| | ||| Sbjct 26055 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 26008 >seq6148 Length=6489 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 |||||| || | || || |||||||| || ||||| ||||| ||||||||||| | || Sbjct 331 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGG 272 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | |||||||||| |||||| || |||| | | | || ||| | ||||| Sbjct 271 GATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATCGAGTCCGAGGGCTCCAC 212 Query 43136 ATCGACCGTGATGGTTTTGCC 43156 |||| ||||||||| ||||| Sbjct 211 GTCGAGCGTGATGGTCTTGCC 191 >seq2466 Length=31792 Score = 82.4 bits (90), Expect = 9e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 |||||| || | || || |||||||| || ||||| || || ||||||||||| | || Sbjct 25635 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGG 25576 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | | |||||||||| |||||| || |||| ||| | | | || ||| | |||| Sbjct 25575 GATTCCCTCCTTGTCCTGGATTTTCTGCTTGA-CGTTGTCAATCGAGTCCGAGGGCTCCA 25517 Query 43135 CATCGACCGTGATGGTTTTGCC 43156 | |||| ||||||||| ||||| Sbjct 25516 CGTCGAGCGTGATGGTCTTGCC 25495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571732534984280